Psychrobacillus sp. INOP01: KD050_20410
Help
Entry
KD050_20410 CDS
T09653
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KD050_20410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_20410
Enzymes [BR:
psyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KD050_20410
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KD050_20410
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
QUG41599
LinkDB
All DBs
Position
4158479..4160323
Genome browser
AA seq
614 aa
AA seq
DB search
MPMLLTASMEVPVGNEWVYETKYDGFRCILEWEHEPLLKSRNGKLLNDMFPEIINFCHEI
FNQIKSFLPLTMDGELVYLINNFQSDFSKVQLRGRLKNVETIKNNSQIFACHYIVFDLLE
SKGCDLTNLSLSKRKQQLDRLFKKALLPVSINYQDTNRLQAIDVFKDNTLLWDRIVTNNG
EGLIAKQKNSTWNSAKRTTKWLKIKNWRFISVILTKYDKSNGFFHGALYKDTSLLEVVTF
RHGLSEIELDTLIALFQSNGTKLSNNIWEIEPSICVEIACIDFDGKKLREPRFHSFNLNK
DILDCNWQQMYKQLYPLPPTTMMTHPDKPIWPDLGIQKDDYLLYLHRISPYILPFLKDRH
LTVIRFPHGVTGESFYQKNSPEYVPEFIATKQMDDINYMMCNDLESLLWLGNQLALEFHV
PFQTVNTNNPTEVVFDLDPPSVHEFSLAVEAALRMKAIFDQFQLKSYVKTSGGKGIQLYI
PLVEDSFTYEETGIFTKFISEFLVEQDPKWFTTERLKKNRGNKLYLDYVQHKEGKTIIAP
FSPRGNELGLIATPLQWKEVNEFLKPDTFSIPYVLDRIKNEGNPFHDFRVNLETEKFSLI
LNQLKALMKNNLLL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgccgatgcttttaactgcctcaatggaagttccagtaggaaatgagtgggtgtatgaa
acgaaatatgatggattccgatgcattttagaatgggaacatgagcctttactgaaaagt
agaaatggaaaattactaaatgatatgtttccagagattattaacttttgtcatgagatt
tttaaccaaattaaaagctttttaccactaacgatggatggagaattagtgtatttaata
aataattttcaaagtgatttttccaaagttcagttaagaggtcgtttgaaaaatgtcgag
actataaaaaataattcacaaatatttgcttgtcattatattgtatttgatttgctcgaa
tctaaaggatgcgacttgacaaatctttctttaagtaagcgaaagcagcaactggatcga
ctgtttaaaaaagccctgcttcctgtatctataaattatcaagatacaaatagattgcag
gccattgatgtatttaaagacaatacactattgtgggatagaatagtcacaaataatgga
gaagggttaatcgctaaacaaaaaaatagtacatggaatagcgccaagcggactaccaag
tggttaaaaataaaaaactggagatttataagtgtcattttaactaaatatgataaaagt
aatggcttttttcatggtgcactttataaagatacctctttattagaagtagttacattt
cgtcacggactatccgagatagagctagatacattaatagcattatttcaatcgaatggg
acaaaattatccaataatatttgggaaatagaaccgtccatttgcgtagaaattgcttgt
attgattttgatggaaaaaaattaagggaaccaagatttcattcctttaatttgaataaa
gacatactggattgtaattggcaacaaatgtataaacaattatatcccttaccaccaact
acaatgatgacccatccagataagcctatatggcctgacttgggaatacaaaaagatgat
tatctattgtacctgcaccgaatatcgccatacattttaccttttctaaaggataggcat
cttacagttattcgttttccacatggagtaacaggagaaagtttctatcagaaaaatagc
ccagaatatgttccagaatttattgcgacaaagcaaatggacgatattaactatatgatg
tgtaatgatttagaatcattactctggttaggaaatcagctggctttagaatttcatgtc
ccttttcaaacagtaaatacgaataatccgactgaggttgtatttgacttggatccaccc
tcggttcatgagttctcattggcagttgaagctgctctgcgtatgaaagcaatatttgat
caatttcagcttaaatcttatgttaaaacctctggtgggaagggtattcagctttatatt
ccactagtggaggatagctttacatatgaggagactggtattttcactaaatttatatct
gaatttttagtagagcaagatcccaagtggttcactactgaaaggttgaaaaagaatcgt
gggaataaattgtatttggattatgttcaacataaggaaggcaaaacgataatcgctcca
ttttcaccaagggggaatgagttggggcttatcgcaactccacttcaatggaaggaggtt
aatgagttcttaaaaccagataccttttcgattccatatgtgttagatcgcataaaaaac
gaggggaatccctttcatgactttagagtaaatttggaaacagagaaattttcgcttata
ttaaaccaattaaaagccctaatgaaaaataatttattgttgtaa
DBGET
integrated database retrieval system
