Psychrobacillus sp. AK 1817: D0S48_00030
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Entry
D0S48_00030 CDS
T06219
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psyh
Psychrobacillus sp. AK 1817
Pathway
psyh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D0S48_00030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyh03400
]
D0S48_00030
Enzymes [BR:
psyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D0S48_00030
DNA repair and recombination proteins [BR:
psyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D0S48_00030
BRITE hierarchy
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Ortholog
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Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QEY19214
UniProt:
A0A5J6PR49
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Position
4934..6781
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AA seq
615 aa
AA seq
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MKPMLLTASENIPLDKDWLYETKYDGFRCILEWEVEPILKSRNENILNKMFPEIIQFCYT
IEEQVKPHLPLVLDGEIVHLINSYKSHFTIVQTRGRMRKKEAIESHLLHFPCHLAIFDLL
IYKGKDITNKTLAERKEKLSLLFKNLKLPLNINSEDNNRLQMIELHKDSKPLWEKIVAHN
GEGMVAKKEKSRWTSDKRSTDWLKIKNWKITTIILTVFDKSNNYFFGAIYDEGQLVDVVN
FSHGLMEEELVTLQKFFYSNGQKIGRNKWQIEPSICVDIASIDFDGKSLREPRFHRFNLE
CDPLNCTRRKFYLQLYSLPENVKVTHPDKPLWISNDIKKEDYLYYLQRVSSYMLPFLRDR
LLTVIRYPHGAISDELFYQKNWEDNVPNYVKTKFFEDNRYVLCNNIETLLWLGNQIALEF
HIPFQTIHSELPTEIVFDLDPPSVDYFWMAVDAALKMKAIFDNFSLISFVKTSGGKGLQI
YIPLPKNLFSYEETRIFTKFVCDFLCEQNPDIFTTERMKKNRNNKLYLDYVQHHEGKTII
APYSTRGNDGGFVATPLKWEEVNKQLSPTFFSIPIVLERIEKHGNLFNNFWHVENGEAFK
KVLEQLKNILNIHKS
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
attaaaccgatgcttttaactgcaagtgagaatattcctttggataaggattggctttat
gaaactaaatatgatggatttcgctgtattttagaatgggaggttgagcctattttaaaa
agtagaaatgaaaacatcctcaataaaatgtttccggaaattatacaattttgttatacc
attgaagagcaagtaaaaccccatttacctttagttctggatggagaaatcgtacatttg
attaatagttacaaaagccattttacaatcgtgcaaacaagaggaagaatgagaaaaaaa
gaggcaattgaaagccatctattacatttcccttgtcatcttgctatttttgatctttta
atatataaaggcaaggacattactaacaaaacacttgctgaacgtaaggagaagctctct
cttttattcaaaaatcttaaactgccattaaacataaatagcgaggataataatcgttta
caaatgattgagttacataaggatagtaagccactatgggagaaaattgtagctcacaat
ggagaaggaatggtggcaaagaaagaaaaaagcagatggacaagtgacaagcgttccact
gattggctaaagataaaaaactggaagattacaaccatcatcttaacagtttttgataag
agtaataattatttttttggtgcgatttatgatgaaggacaattagtagatgtggtcaat
tttagtcatggtttaatggaagaagagctagttactcttcaaaagtttttttatagcaat
ggtcaaaaaattgggagaaataagtggcaaattgaaccttctatatgtgtggatattgcc
tctatagattttgacggaaaaagcttaagagagcctagattccatcgatttaatcttgaa
tgtgatccgttaaactgtacgagaagaaaattttatttacaattatattcacttcctgaa
aatgtgaaggttacccatcctgataagccattatggatttcaaatgatataaaaaaagaa
gactacctatactatcttcagcgggtttcgtcctatatgcttccttttttacgagaccgt
ttacttactgtcattcgttatcctcatggtgcaatttcagatgaacttttttatcaaaag
aactgggaggataacgttcccaattatgtgaagactaagttctttgaagataataggtat
gtcctttgtaataatatcgaaacacttctatggttagggaatcagatagctttagaattc
catataccatttcaaactattcattcagaattgccaacagaaattgtgtttgacttagac
ccaccatcagtggattatttttggatggcagtggatgcagctcttaaaatgaaagctata
tttgataatttttctcttatttcatttgtcaaaacatctggaggcaagggattacaaata
tatatacctttacctaaaaatttattttcttatgaagaaactaggattttcacaaagttt
gtctgcgatttcttatgtgaacaaaatcctgatatttttactacggaacgaatgaaaaag
aatagaaataacaagttgtacttggattatgtgcaacatcatgaaggaaaaacaataatt
gctccatattctactagaggaaacgacggtggttttgtcgctacacccttaaagtgggag
gaggttaacaaacaactaagtccgacttttttttcgataccaattgttttggaaagaatt
gaaaagcacggaaatctatttaacaacttttggcatgtagaaaacggagaagcattcaaa
aaagtactagaacagttaaaaaacatattaaatattcataagagctaa
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