Psychrobacillus glaciei: PB01_12560
Help
Entry
PB01_12560 CDS
T06231
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psyo
Psychrobacillus glaciei
Brite
KEGG Orthology (KO) [BR:
psyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PB01_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyo03400
]
PB01_12560
Enzymes [BR:
psyo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PB01_12560
DNA repair and recombination proteins [BR:
psyo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PB01_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QFF99597
UniProt:
A0A5J6STN1
LinkDB
All DBs
Position
complement(2658310..2658825)
Genome browser
AA seq
171 aa
AA seq
DB search
MDPPSFPEFSLAIKAALQVKAKFDHFELTSLVKTSGGKGIQIYIPLSFNTYSDDDTRVFT
KFFCDFLCEQEPQCFTTERLKKNRHNRLYLDYVQHQEGKTIIASYSPRGNEMGLIATPLK
WDKVCDTIKPNLFTVPSVLDRLYKQANPFRDFRLEIEDQKFANVLNQLRNE
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
ttggatcctccttcctttccagagttttctttagcgatcaaagcagcattacaggtgaag
gcaaaatttgaccattttgagctaacgtcccttgtgaaaacttctggtggtaaaggaatt
caaatttatatcccattgtctttcaatacttattctgatgatgacactcgtgtttttaca
aagtttttttgtgatttcctatgtgaacaagaaccgcaatgtttcacgacagaaagatta
aaaaagaaccgccacaatagactgtacttggactatgttcagcatcaggaagggaaaacc
ataatagcgtcctattccccaaggggtaacgagatggggttaattgcgactccgttaaaa
tgggataaagtgtgtgataccataaagcctaacttgtttaccgttccatccgtcctagat
cgtttatataagcaagctaatccatttcgcgactttcgcctagaaatagaggaccaaaag
tttgcaaatgtccttaaccaactaaggaatgaataa
DBGET
integrated database retrieval system