Pseudomonas syringae CC1557: N018_16280
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Entry
N018_16280 CDS
T03014
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N018_16280 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_16280 (ligD)
Enzymes [BR:
psyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N018_16280 (ligD)
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N018_16280 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHG41670
UniProt:
W0MWS7
LinkDB
All DBs
Position
complement(3615927..3618518)
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AA seq
863 aa
AA seq
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MAKPASEYTRKRNFNVTSEPAESKRKGKARSSALSFVIQKHDARNLHYDFRLELDGTLKS
WAVPKGPSLDPKQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGIWQPHGDPQK
TYEEGKLKFTLVGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDSIARPADEYDITQEQPQ
SVISGAHVGAGRAASAKPKPKPGNATSKAKAATPKVAASKAEPKRAKTAIPDALSPQLAT
LVDAPPAGEWLYEIKFDGYRMLTRIQDDEVRLFTRNGNDWTDQLPELVKALKGLKLQDSW
FDGEVVVLDEQGLPDFQGLQNAFDEGQSKNILYYLFDMPFLSGEDLREVPLEQRRDALKQ
VLGSQRSRVLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNPDWIKLKCRLR
QEFVIVGYTAPQGSRSAFGALLLAVNDAKQGLVYAGRVGTGFNEATLKQLHKQLQPLQRE
TSPLAKKLSAAQARGVQWLEPQLVCEAEFAQWTREGILRQAAFVGLRTDKPASDVVHEQA
QPAKAVSKTKVASAAPKTGKKTAQGKVDVSGTGISHPDRVIDSKTGTQKIELAQFYASIA
EWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPNIKQLDRALDPGHAALMEIDSVQ
ALVGATQMGAIELHTWGATRDKIETPDHLVLDLDPDPALPWRSMIEATQMVLAVLDELGL
EAFLKTSGGKGMHIIVPLARQADWDTVKAFSKAIAEFVSRQLPERFTATMGPKNRVGKIF
VDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLTSSAQWDITTLEQRLSTLKDDP
WAGYSNRRKITQKMWKQLGAKQP
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccagccagtgaatacacacgcaagcgcaattttaatgtcacctcagagcct
gccgagagcaaacgcaaaggcaaggcgcggtccagcgcgctgagctttgtgattcaaaaa
cacgatgcgcgtaatctgcactacgacttccgcctggaactggatggcacgctcaagagc
tgggcggttcctaaaggtccaagcctggacccgaagcaaaagcgtctggcggtgcatgtc
gaggatcatccgctggattacgccggtttcgagggcagcattccgcaagggcaatacggc
ggaggcgacgtaattgtctgggatcggggcatctggcagccccatggcgatccgcaaaag
acttacgaggaaggcaagctcaagttcacgctggtcggcgagaagctcagcggcgagtgg
gcgctggtacgcacgcggctcaaaggcagcggcagtaaggaacaatggctgctgatcaag
gaaaaggactcgattgcccgacccgccgacgagtacgacatcacccaggaacaaccacaa
agcgtgatcagcggcgcgcatgtcggggccgggcgtgcagcgtctgccaagcccaagccc
aagcccggcaatgcaaccagtaaggccaaggctgcaacgccaaaagttgcagcatcaaaa
gccgagccgaaaagagccaaaacagcgatcccggatgcgttgtcgccacaactggcaacg
ctggtggatgccccgcccgcaggtgagtggctgtacgagatcaagttcgacggctaccgc
atgctcacgcgcatccaggatgacgaagtgcgtctgttcacccgtaacggcaatgactgg
accgatcaactgcctgaactggtcaaggcccttaaaggcttgaagttgcaggacagctgg
ttcgacggcgaagtggtggtgctcgacgaacaagggttgcccgactttcagggcctgcag
aatgcctttgatgaggggcaaagcaagaacatcctgtattacctgttcgacatgccgttt
ctgagtggcgaagatttgcgcgaagtgccactggaacagcgtcgtgacgccttgaaacag
gtgctcggcagccagcgcagccgcgtgctgcgctactccgatgcgtttcaggccgggcat
caggacattgttgccagcgccgctgcaatgggcctcgaaggggtgatcggcaaacgtgcc
ggcagcgcctatgtgagcaagcgcaatcccgactggatcaagctcaaatgccgtttgcgt
caggagtttgtgatcgtcggctataccgcgccgcagggcagccgctcggcgttcggcgcg
ttgttgctggcggtcaatgacgccaagcaaggcctggtgtacgccgggcgggtcggcact
ggcttcaacgaagcgacactcaagcaattgcacaaacagttacagccgttgcagcgcgag
acctcgccgctggcaaaaaaactgagcgcagcgcaggcgcgaggtgtgcaatggttggag
ccacagctggtctgcgaagcagagtttgcccagtggacccgcgagggtattctgcgtcag
gccgcattcgtcggcttgcgcactgacaagcctgcaagcgatgtggtgcatgaacaggcc
cagccggcgaaggctgtcagcaaaaccaaggtcgcttcagccgctcccaaaacgggtaaa
aaaaccgctcagggcaaagtcgacgtatcaggaactggcatcagccatccggatcgggtc
atcgacagcaagaccggtacgcagaagattgaactcgcgcagttttacgcgtccattgcc
gaatggattctgccttatctgaacaagcgtccggtggcactcttgcgctgtcctgaaggc
atcgatggcgagcagtttttccagaagcacgccgagcatctggccattccaaatatcaag
cagcttgatcgcgcactggaccccggtcatgccgcgctgatggaaatcgactcggtgcag
gcgctggtcggtgcgacgcaaatgggtgccatcgaattgcatacctggggcgcgacccgc
gacaaaatcgagacgcctgatcacctggtactcgacctcgatccggacccggcgctgcct
tggcggagcatgatcgaggccacccagatggtacttgccgtgcttgatgagctgggcctg
gaagcttttctgaagaccagtggcggcaagggcatgcacatcatcgtgccgttggcgcgg
caggccgactgggacaccgtcaaggcgttttccaaggcgattgccgagtttgtcagtcgg
caactgcccgagcgctttacggccaccatggggccgaaaaaccgggtcgggaagatcttt
gtcgattacctgcgcaacagtcgcggcggcagtacagtcaccgcctattcggtacgcgcc
cggccgggtttaccggtctcggtgccgattgcactggatgagctggcgggtctgacgtcg
tcggcgcagtgggacatcaccacgcttgagcagcgtttaagcacgctcaaggatgaccct
tgggcgggctacagcaaccgccgaaaaatcacgcaaaagatgtggaagcagttgggtgcc
aaacagccttga
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