Psychrobacter sp. YP14: DLE54_07565
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Entry
DLE54_07565 CDS
T05488
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DLE54_07565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_07565 (mfd)
Enzymes [BR:
psyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DLE54_07565 (mfd)
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DLE54_07565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWT49379
LinkDB
All DBs
Position
complement(1845961..1849686)
Genome browser
AA seq
1241 aa
AA seq
DB search
MPKFIEHPLTDIFTPTNEQLFPIDKAQKRWLYPAYAAAGSLWLASLSDCPVANVANRLKV
VVTKDQNQLNQIETELAFCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMPKQGIL
LISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAGYRAVDNVFEPGEFAVRG
SVIDIFAMGQPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTLMDLVAGRADANSANQHDL
TVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNFAAMFPNVSSRRFELHKDV
MAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFSKDTLFIIDENTAEAQADYWSQIQRRYE
ERRHDIDKPIVEPTLLYLPSNSLNEMLNAYPRVILSQSDLAAADNTQSGKVKLPALMPPE
LPVSHQKAEPLLELLNYASAGWDDNTTEAALARPILVVAETAGRREILLELFRGKLNVQT
FDSLQQFLGSELYQQSLIKNTASASNTKPTVGLTIAPIERGAVIDQHLSIISETQLFGRQ
VLQTRRRRQSDVSEEFLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKY
ADDASIYVPVANLQLISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQA
RRQAKEGIHFKVETAQYELFASQFAFEETPDQANAIDAVMHDMKQNKPMDRLICGDVGFG
KTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHEDNFKDRFADWPIRVETLSRFGGKKYQD
QVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLMIVDEEHRFGVRHKEQIKAIQSDVDSLS
MTATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVY
LLHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIET
GIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAI
ERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPD
LNTPLSLTSDINLHSSALIPEDYVNDVPQRLLFYKRISNAEDKEVLTDIRTEMIDRFGAL
PDQTKQLFAIHQLRVLAEPLAIYKIDATSNRVILEFAPDTPVEALAIIQLIQSDGNRYRM
NGASGIRYTNPDKLDTPAKRVEVVRELLNHFTRHVKDKAAQ
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaatttattgagcaccctttaaccgatatttttacccccaccaacgagcagtta
tttcctatcgataaggcgcaaaagcgctggctttatccggcttatgcagcagcaggcagc
ttatggctggccagtttaagtgattgtcctgtggccaatgtcgccaatagactcaaggtg
gtcgtcaccaaagatcaaaaccagctcaaccaaatcgagacagaattggcattttgcggt
gtcgatgcttatgtgtttcctgattgggagacactaacctatgatgagctgtcaccgcat
caagatattgtcagtgagcgtatcaatctattaaccgatatgccaaagcagggcatttta
ctgattagtattcagacgctgatgcagcgtatggcgccgccaagctggctgattggtcag
cattttgatttaagcgttggtgatatttttgacatcaatcaacaacgagagatgctcgcc
gcagccggctatcgggcggtggataatgtgtttgaacccggtgaatttgcggtgcgcggt
agtgtgattgatatcttcgccatgggtcagccgtttccgctacgcttggatttgtttgat
aatgaaattgagaccattcgattttttaacccgcagactcagcgcacactgtctactcag
accttgatggatctggttgcaggccgtgccgatgccaatagtgccaatcagcatgattta
acggttgaatccttatctctactgcataagctgcctgatgtgtctaagccaatcactcag
tttcagatcttgccggccaaagagtttccgctagatgagggcaaagagaccttccgtaat
aactttgcagccatgttccccaatgtcagtagccgcaggtttgagctacacaaagacgta
atggcaggcattgccagtagtggtctggagtactaccagccattgttttttgaaatagag
gattggtcacaaaatggccatttattctcctatttctccaaagataccctgtttattatc
gatgaaaatacggctgaggcgcaggctgactattggtcacagattcagcgccgttatgaa
gagcgccgtcatgatatcgataagccaattgtagaacctacattgctttatttaccaagc
aatagcttaaatgagatgctcaatgcgtatccgcgcgttatcttaagccaaagtgactta
gcagctgccgataatacccaaagcggtaaggtaaaactgccggcactgatgccgcctgag
ctgccggtcagtcatcaaaaagctgagcctttattagagcttttaaattatgccagtgcc
gggtgggatgacaacaccactgaggcggctttagcgcgcccaatcctagtggtggccgag
actgctggccgacgtgagattttacttgagctatttcgcggcaagcttaatgtgcaaacc
tttgatagcttacagcagtttttaggcagtgagttgtatcaacaatcattgattaaaaac
accgcatccgctagcaacactaagccaacggtgggtctgaccattgcgcccattgagcgc
ggcgcagtgattgatcagcatttatccattatcagtgaaactcaactgtttggtcgtcaa
gtgctacaaacccgtcgtcgccgtcaaagcgatgtgtccgaagagttcttagtaaaaagt
gtcaccgaattaacagaaggcagtccggtggtgcacattgaccaaggtattggtcgttat
catggtctaatcactctagacatcggtgaaggtgagcaagaatttattcatctaaaatat
gccgatgatgccagtatctatgtgcccgtggccaatctacagctgattagtcgttatagt
ggcggtgatccagcacttgcgcctttgcataagattggtagcggtaaatgggataaggcc
aaacaaaaagcactggagcaaatccacgatgtggcggctgagctgcttaatatgcaggcg
cgccgtcaggccaaagagggtatccacttcaaggtggaaacggctcagtatgagctgttc
gccagccagtttgcctttgaagaaacccccgatcaggccaatgccatcgatgcggtgatg
catgatatgaagcagaacaagccgatggatcgcctgatttgcggtgatgtgggctttggt
aaaacagaggtggccatgcgcgcggcctttattgcggtaaatagtggctatcaagtggcg
gtactggtgccgactaccttgctggcaggacagcatgaagacaactttaaagaccgcttt
gctgattggccgattcgagtggagacgctttctcgctttgggggcaaaaaataccaagat
caagtgctagaggatctagcagcaggcaaagtagatattgttattggcacccataagctg
ctacaaaaagacgtgaaatttgccaatttaggcttaatgattgttgatgaagagcaccgc
tttggggtacgccacaaggagcaaattaaagccattcaaagcgatgttgatagcttgtct
atgactgccacgcccattccgcgtacgctcaatatggcattgaccggtatgcgtgacatg
tcaattattgccactccgccggcgcgccgcttgtcgattaaaaccttcgtgatgcaaaag
acaaatcagctcatgaaagaggctattttgcgtgaactgctgcgtggcggtcaggtgtac
ctgctgcataatgatgttgctagcatcgagcgtatggcagaaaatatccgagagcttgta
ccagaggctcgagtcggtgttgcgcatggtcagatgaatgagcgtggtcttgagcaggtg
atgcagcagttttatcacaaaaaattcaacgtgctggtgtgtaccaccattattgagact
ggtattgacgtgcccaatgccaataccattatcatcgagcgcgccgataaatttggttta
gcacagctgcatcaactacgtggccgagtagggcgtagtcaccatcaggcttactgttat
cttctagtgccttcggtaaaaggcctaaaaggcgatgccaaaaaacgcttaactgccatt
gagcgtgccaataccttgggcgcaggctttatgctggccagtgaggacttggagattcgc
ggcgctggcgagatactgggtaaacagcaaagcggtaacatgcaggccattggttttagt
ctgtacatggacatgctagagcgggcaaccaaagccattaaagcgggcaaagagccggat
ttaaacacgccgctgtcgttgaccagtgatattaatcttcacagctccgcgctgatacct
gaagattacgtcaatgatgtgccgcagcgcttactattttataaacgtatcagtaatgcg
gaagacaaagaggtgcttactgacattcgtaccgaaatgattgatcgctttggtgcgctg
cctgatcagaccaagcagctgtttgcgattcatcagttgcgggtattggctgagcctttg
gcgatttataagattgatgcgaccagcaacagagttatcctagagtttgccccagacact
ccggttgaagcactagcaattattcagcttattcagtctgatggcaatcgctaccgtatg
aatggtgcctcaggtatccgctataccaacccggataagcttgacacgccagccaagcgg
gtagaggtagtgcgtgagctgctcaaccactttacccgtcatgttaaggacaaagcggct
cagtag
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