Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_3671
Help
Entry
PSTAB_3671 CDS
T01571
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psz03019
]
PSTAB_3671 (hrpB)
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSTAB_3671 (hrpB)
Messenger RNA biogenesis [BR:
psz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSTAB_3671 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_19
DUF5401
Motif
Other DBs
NCBI-ProteinID:
AEJ06952
UniProt:
F8H296
LinkDB
All DBs
Position
complement(3955344..3957869)
Genome browser
AA seq
841 aa
AA seq
DB search
MNSLPIDEVLPALRQALQQRDEAVLEAPPGAGKTTRVPLALLGEAWLAGQTIIMLEPRRL
AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALEGVGL
VIFDEFHERSLDADLALALTLNARQLLRDEPLKLLLMSATLEGQRLSALLDEAPVVRSEG
RMHPVEQRWGRPLAPGERIEPRVVQTVLQALQDERGSVLVFLPGQAEIRRVNEALTEQLE
GRGDILLCPLHGELELAQQRAAIEPAPAGLRKVVLATNIAETSLTIEGVRVVVDAGLARV
PRFDPGSGMTRLETRRISRASATQRAGRAGRLEPGVCYRLWSEEQHGQLAAYGEAEILQA
DLAGVALQLARWGVEPDELAWLDRPPAAAYGQAQALLERLGALQRSEHGGWQLTRHGQAM
AELPVHPRLAHMLLRGQALGVAALAADVAALLVERDIQPGGQRGGGADLALRLHQLQDGR
GAGVQRVRQMARQFRSLLRGAAAAPAAELDEQHALAALLAFAYPDRVARQRREGGGGYRL
ANGRAAQFGEPDQLMKEPWLVIAELGSHQGQREERIYRAVALDAALFEGALAEQVAVRDE
LEWDEREGVLRAERQRRVGELVLSREPLPTLDEEARGKALLALVRRKGLELLAWTPELRQ
WQARIGLLRQLELDAGDTSDWPDVSDAALLARLEDWLLPYLGKVTRLVHFAQLDLAAMLA
TLLPWPLPQRLEEQAPVAVTVPSGSRIRLDYSEQPPVLAVRLQELFGLADTPRIAAGRQV
VKLHLLSPARRPVQVTQDLASFWANTYAEVKKDLKGRYPKHYWPDDPLIAEPTARAKPRG
Q
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgaattccctaccgatcgacgaagttctgccggcgttgcgccaggccctgcagcagcgc
gacgaagccgtgctcgaggcgccgcccggcgccggcaagaccacccgcgtgccgctggcg
ctgctcggcgaagcctggctggccgggcagaccatcatcatgctcgaaccgcgccggctg
gccgcccgcgccgccgccgaacgcctggccagcgagctgggcgagcgggtcggcgagacg
gtgggctaccgcatccgcctggacagcaaggtcgggccgaacacccgcatcgaggtggtc
accgagggcatccttgcgcgccgcctgcaggacgacccggcactggaaggcgtcgggctg
gtgatcttcgacgaattccacgagcgcagcctggatgccgatctggccctggcgctgacc
ctcaatgcgcgtcagctactgcgcgacgagccgctcaagctgctgctgatgtcggcgacg
ctggagggccagcgcctgtcggcgttgctcgacgaggcaccggtggtgcgcagcgaggga
cgcatgcacccggtggagcagcgctggggccgcccgctggcgccgggcgagcgcatcgag
ccgcgggtggtgcagacggtgctgcaggcgctgcaggacgagcgcggcagcgtgctggtg
ttcctgccggggcaggccgagatccgtcgggtgaacgaagcgctgaccgaacagctggag
gggcgcggcgacatcctcctctgcccgctgcatggcgaactggagctggcccagcagcgt
gcggccatcgagcctgcaccggcaggcctgcgcaaggtcgtgctggcgaccaatatcgcc
gagaccagtctgaccatcgaaggtgtgcgggtggtggtggacgccgggctggcgcgggtg
ccgcgcttcgatcccggcagtggcatgacccgcctggaaacccggcgcatctcccgtgcc
tcggccacgcaacgggcggggcgggccgggcggctggagccgggtgtctgctaccggctg
tggtcggaggagcagcacgggcagctggcggcctacggcgaggcggaaattctccaggcg
gatcttgccggcgtcgcgctgcagctggcgcgctggggtgtcgagcccgacgagctggcc
tggctcgatcgtccgccggccgccgcctacggtcaggcgcaggccctgctggagcgcctc
ggtgcgctgcagcgcagcgagcacggcggctggcagctgacccgtcacggccaggcgatg
gccgagctgccggtgcatccgcgcctggcgcacatgctgctgcgcgggcaggcgttgggc
gtggctgcgttggctgccgacgtggcggcgctgctggtcgagcgtgacattcaacccggc
gggcagcgcggcggcggagccgatctcgccctgcgcctgcatcagttgcaggatggtcgt
ggtgctggggtacagcgcgtccggcagatggcccggcagtttcgcagcttgctgcgcggt
gctgcggcggcgccggctgctgaactcgatgagcaacacgccctggccgcactgctggcc
ttcgcctatccggaccgggtggcccgacagcgccgcgagggcggcggtggctatcggctg
gccaacggccgcgcggcgcagttcggcgagccggaccagttgatgaaggagccgtggctg
gtgatcgccgagctgggcagccatcagggccagcgtgaggagcgcatctatcgcgccgtg
gcgctggacgcggcattgttcgagggggcgctggccgagcaggtcgccgtgcgcgacgag
ctggaatgggacgagcgcgagggcgtgctgcgtgccgagcggcagcggcgggtcggcgag
ctggtgctcagtcgcgaaccgctgccgacgctggacgaagaggcacgtggcaaggcgctg
ctcgcgctggtgcggcgcaaggggctggaactgctggcctggacgccggagctgcgccag
tggcaggcgcgcatcggcctgctgcgccagctcgagctggatgcgggcgacaccagcgac
tggccggatgtcagcgacgccgcactgctggcacgcctggaggactggctgctgccttat
ctgggcaaggtcacgcggctggtgcacttcgcccagctcgatctcgccgcgatgctcgcc
accctgctgccctggccgctgccgcagcgcctggaggagcaggcaccggtggccgtcacg
gtgccctccggctcgcgcatcaggctggactacagcgagcagccgccggtgctggcggtg
cgcctgcaggagctgttcggcctggccgacacgccgcgtatcgccgctggccggcaggtc
gtcaagctgcacctgctgtcgccggcgcgccggccggtacaggtcacccaggaccttgcc
agcttctgggccaatacctatgccgaggtgaagaaggatctcaaggggcgctatcccaag
cactactggccggacgatccgctgatcgccgagcccaccgccagggccaagccccgcggg
cagtga
DBGET
integrated database retrieval system
