Paenibacillus terrae: HPL003_07685
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Entry
HPL003_07685 CDS
T01668
Name
(GenBank) transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pta
Paenibacillus terrae
Pathway
pta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPL003_07685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pta03400
]
HPL003_07685
Enzymes [BR:
pta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPL003_07685
DNA repair and recombination proteins [BR:
pta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPL003_07685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AET58300
UniProt:
G7VUX7
LinkDB
All DBs
Position
1640717..1644244
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPIMVMTHN
MFAAQKIADDLQEALPPERVLLYPSNELVAAEAAISSPETLSQRIEVLIRCAQGFRGIVV
VPFSGVRRLLPLPETWREARIELKEGETIQLEPFLLHMVEMGYQRVERVESRGEMSVRGG
IIDFYPMTTRWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTITPCKEVIADSARMDQA
ADAAAILLEEQLGKMTDRQAKLHLKEEIHREIELLREHVYFDEIYKYISLLYPERKTLAD
YMPEDTILIIDEPARMLETAKQLERDESEWNLHLLQNGKTLPQLELSDNVDNLLYNRRFQ
TLFLSIFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKAEMDRWRKAGTQVMMLASGDER
LDRMRRVLQDYGIDEPTMAIGNLQSGFEMPSIHLAVITEGEMFSQKQRKARKQGRHVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSP
EQQEFEDMFPYEETRDQIRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETIKGVRQGTVDIVI
GTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE
INALVPDAKVGVGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNRNWSTSIDLG
VDAYLPGDYIYDSIQKIEIYKKVAAVSTFDEAMELEDELVDRFGDLPEAVLHLLAVARLK
VYGRMYGIESIAQRDDNVVLKFHEGRQQAVQTAKLGEIGNRFERRVQFEQGTSMSARIKG
KGLDDPQLLELLEQFLSALKEAFTLKEELQNVTTK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattcaggcttttaccaaggatgctgattatgcatccattgcagca
ggtatttcatcaggcatgaaggaacagctcatatctggtttatcgggctcttcccgacag
gtactgatggccgcgcttgccgaagataccggacgaccgatcatggtcatgacgcacaac
atgtttgccgctcaaaaaatagcagatgatttgcaggaagcgcttcctcctgaacgggtt
ttgttgtacccctcgaatgagctggtggctgctgaggccgccatatccagcccagagacg
ctatcccaacgaattgaagtattgatacgatgcgcccagggttttcgtgggattgttgtc
gtgccgttttctggtgtccggcgtttgctgccgctcccagagacatggcgtgaagcgcga
atcgagctgaaagaaggcgaaacgatccaactggagccgtttttgctgcatatggtcgag
atggggtaccagcgggtggagcgtgtagaatcacgtggagagatgagtgtccgtggcggg
attatcgatttttatccgatgacaacccgttggggctaccgcgtggagctgttcgatgat
gaaattgactccatccgtatgttcgacccgcaagatcagcgttcggtggaaaaggtgcag
gaagttaccataacgccgtgcaaggaagtcatcgcggatagcgctcgtatggatcaggcg
gcagatgccgcagcgattctgttggaggagcagctcggcaaaatgacagaccgccaggcc
aagctgcatctgaaagaagagattcaccgcgaaatcgagctgctgcgggagcatgtgtat
tttgacgaaatctataaatatatctcgctgttgtatcccgaacgcaaaaccttggcagat
tacatgccggaagacaccattctgatcattgatgaaccggcgcgaatgctggaaacagcc
aagcagctcgaacgggatgagtccgaatggaatctgcatttgcttcaaaacggtaaaacg
ttaccgcagctagaactgtcggataacgtggacaatctgctgtataaccggagattccaa
acgttgttcctgtcgatctttctccgtcaggttccgcatacgcagccgcaaaatattttg
aatttcatctgccggggcatgcaggatttccacggtcaaatgaatgtgctcaaggcggaa
atggatcgttggcgcaaggcgggcacgcaggttatgatgctggcgagtggagacgagcgg
ctggatcggatgcgtcgtgtgcttcaggattacggtattgatgagccaacgatggctatc
ggcaatttgcaaagcggttttgagatgccatctattcatttggcggtgattaccgagggc
gaaatgttctcgcaaaagcagcgcaaagcacgcaagcagggccgccatgtggacaacgca
gaacggattaagagctatagcgagctgaaggtgggcgactatgtcgtacaccagaatcac
gggatcgggaagtacatggggatcggtacgctggaggttggcggtatccataaggattac
atgcacattctctatgcgggtggcgataagctgtctgtaccgattgagcagattgacctg
attcagaagtatgtcggctcagaggacaaggaacctaagatttacaagctgggcggtaat
gagtggacacgagtgaagagcaaggttcgcagctcggttcaggacattgctgacgacttg
attaagctgtatgcagaacggcaatcagcgccgggctttgcttttgaaaaggattcaccg
gagcagcaggaatttgaggatatgttcccgtatgaagagacgcgcgaccagattcgggcg
attgaagagatcaagaaggacatggagcagagtcgtccgatggatcgtttgctgtgcggt
gatgtgggctacggcaaaacagaggtcgccattcgtgctgcgtttaagtcagccattgag
ggcaagcaagtggccgtgttagtaccaacgacgattttggcacagcagcattatgagacg
ttccgtgagcgcttttccgggtatccgttcaacattcaggtgttgagccgtttccgttcg
cgcaaagagcagaatgagacgattaaaggggttcgtcaggggacggtcgatattgtcatt
ggcacccatcgcctgttgtcgcaggatctggtgtttaaggatctgggaatgctcattgtc
gatgaggaacagcggtttggtgtgacgcataaagaaaagctgaaaaagctgaaaacaaat
gtggacgtgttgacgttaacggctacgcctattccgcgtacgctgcacatgtctatgctc
ggggttcgagatttgtcggtcattgagacaccgccggaaaatcgttttccggtgcagact
tatgttgtcgagcacagccaaacgttggtacgtgaggcgattgaacgcgagatggcacgt
ggaggacaggtgtactacctgtataatcgcgtacagggcattcaggaaatggctgccgag
atcaatgcgcttgtgccggatgccaaggtgggcgtgggtcacggtcagatgtccgaatcc
gagctggagaagaccattttggacttcctggacggtgaatatgatgtactggtcagcacc
agcattattgagaccggggtagatattccgaatgtgaatacactcatcgtgcatgatgcc
gataaaatggggctgtcccagctttatcagctgcgtgggcgtgtaggccgttccaaccgg
attgcctatgcttattttacgtaccagcgggataaggtgctgacggaagtggcagagaag
cgccttcagtcgatcaaggagtttacggagctgggctccgggttcaagatcgcgatgcgc
gatttgtctattcgcggagcggggaatttgctcggtgcagaacagcacggtttcattgca
tccgtcggttttgacctttactcgcaaatgctggctgaggaaattaataaacgtaaggtt
agcgtacttggtgaagaggatctgtcgaatcgaaactggagtacgtccattgatttgggc
gtggatgcttacctgccgggagattatatttacgacagtattcagaagattgagatttat
aaaaaggttgcggcagtcagcacgtttgacgaggctatggagctggaggatgagctggtg
gaccgttttggcgacttgccggaggctgtgctccatttgctggctgtggcccgtctcaag
gtgtacggccgcatgtatggtattgaatcgattgcccaacgggatgacaatgtggtgttg
aagttccatgaagggcgtcaacaagcggtacagaccgctaaacttggcgagattggcaat
cgctttgaaagacgtgtacaatttgaacagggcacttctatgagcgcacgcatcaagggt
aaaggtctggatgatccacagctgttagagctgctggagcaatttttgagtgcattgaaa
gaagcattcacattgaaggaggaactgcaaaatgtcacaaccaaataa
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