Paenibacillus terrae: HPL003_14050
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Entry
HPL003_14050 CDS
T01668
Name
(GenBank) eukaryotic-type DNA primase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pta
Paenibacillus terrae
Pathway
pta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HPL003_14050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pta03400
]
HPL003_14050
Enzymes [BR:
pta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HPL003_14050
DNA repair and recombination proteins [BR:
pta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HPL003_14050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AET59561
UniProt:
G7W0E0
LinkDB
All DBs
Position
complement(3032095..3032997)
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AA seq
300 aa
AA seq
DB search
MGQAIKGIITIEGLEIPITNPDKPLWPEAGVTKAMYLRKLAVLAPFLLKYSHNRLLTVIR
WPHGIHGDFFYQKNTPQPRPDYIETFLHDGIEYMVLGTLAQLLWLGNQAALEFHPSLHPV
GSTLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLESVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYKGKTLAAPYTPRARP
GATVSTPLTWDEVRQNVSPLDYHLLNIEERLNQMGDLIAKVPPQPIEDVLKHMRAKTHSS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctattaaaggcatcattaccatcgaaggtctggaaattcctatcaccaac
ccggataaacctctatggcccgaagctggcgtcactaaagcgatgtatcttcgaaagctt
gcggtgctggccccttttctgctcaaatatagccacaaccgtttgctgaccgtcatccgt
tggccacacggcattcacggggattttttttaccagaaaaataccccgcagcctcgtccg
gactatatcgagactttcctgcatgatggcattgaatatatggtgctcggcacgctggca
caattgttatggctcggtaatcaggcggcgctggaatttcacccatcgcttcatccagtt
ggaagcacgctgccctgtgaatggatgattgaccttgatccgtccagagaagtggagcca
cgcattatggaagctgcatccatcgtcggtgaagtactggcttcgcttggtttggaatcc
gtacccaaaacgtccggggctacgggtgtacaaattatcgtcccgatccgcacaggcata
accttcgacgagcttcgcagcatcggtctgctggtgggacagttcgtgaccgaaaagcac
ccgcacctgttcacgctggaacggttaaaaaaggatcggggaaccgctatctattttgac
tatttgcagcattacaaaggaaaaactctggccgctccctataccccgcgggcacgccct
ggcgctacggtatccaccccactgacatgggacgaggtacgacaaaacgtatcgccgctt
gactatcatttgctgaatattgaagaacggctaaatcagatgggcgacttgatcgccaag
gtccctccccagcccatcgaggatgttctaaagcatatgcgcgccaagactcattcatcc
tga
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