Pseudomonas taiwanensis: ICN73_19560
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Entry
ICN73_19560 CDS
T09297
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptai
Pseudomonas taiwanensis
Pathway
ptai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ICN73_19560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptai03400
]
ICN73_19560 (ligD)
Enzymes [BR:
ptai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ICN73_19560 (ligD)
DNA repair and recombination proteins [BR:
ptai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ICN73_19560 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QOJ90052
UniProt:
A0A7L9GC97
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All DBs
Position
4390765..4393266
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGERKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YVKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQHRRDTLRQLLEHNHSDFIKYSADFD
EPVESLLDSACRLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNERGELRYAGKVGTGFNTTTLASIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARIRKQLGLE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgctacacccgagccc
agcggcgaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcctggcagtgcatgtggag
gaccatccgttggactacgccgatttcgagggccatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tatgtcaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcccccttgccagcacagctacagccacag
ctggcaacgttggtggattctccacccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtatcctggcccgaatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggtggctgccctgcgcgcgctcggtatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaatgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaccgccgcgatacg
ttgcgccaactgcttgagcacaaccattccgacttcatcaagtattccgccgacttcgac
gaacctgtcgaatcgctactcgacagtgcctgccggctgaagctggaaggcctgatcggc
aagcgtgctgacagtgtttacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaggaattcgtgatcgtcggctacaccgaccccaaaggcagtcgcagcggc
ttcggtgccctgctgctggccctgcacgacaatgagcgtggcgagctgcgctatgccggc
aaggttggtaccggcttcaacaccacgacactggccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggccaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtactcagttatgaaaaggccgag
gcaggccaggcggcgatggtcattaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggagctgcacacctggaacgccacggacaaggatttcgacaagccggaccgt
tttgtcctcgacctggaccctgatcctgcgctgccatggaaggcgatggtggaggcgacc
caactggccctcaccctgctggatgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgtgccggctgggacgaagtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatacgcaagcagctagggctcgaatga
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