Pseudoalteromonas tetraodonis: PTET_a1197
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Entry
PTET_a1197 CDS
T05282
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTET_a1197 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptd03019
]
PTET_a1197 (deaD)
03009 Ribosome biogenesis [BR:
ptd03009
]
PTET_a1197 (deaD)
Enzymes [BR:
ptd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTET_a1197 (deaD)
Messenger RNA biogenesis [BR:
ptd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTET_a1197 (deaD)
Ribosome biogenesis [BR:
ptd03009
]
Prokaryotic type
rRNA helicases
PTET_a1197 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATD02675
LinkDB
All DBs
Position
I:complement(1145287..1147119)
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AA seq
610 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPEDLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERPERGGERAERKPRERN
SRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPK
DVLDHFQKVFICKRPMGMTLTQDQGPSEPRGERSERPAGDKKRSFNKDGQRPDKRSGPRK
ERRPVSFTAK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttaaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
cctacccgtgagcttgcgatccaagtagctgaggcatttgaacaatatgcaaaacacact
cgtggtgttgaagtattggcactttatggtggccagagctacagcatccagctgagcgca
cttcgtcgtggcgcacagattatcgttgctacaccaggtcgtttaatcgatcacataaac
cgtggcactatcaagtttgatgctttacaagcccttgtacttgatgaagccgatgaaatg
ctacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgtgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgcaactcaactgtatcatcagttgaa
caagtgttttggaatgcacacgtacataaaaataaagcgattgttcgtttcttagaagct
gaacaatacgaaggtgctattgttttcgtacgtacgcgtaacgatacagtgcaacttgct
gagttattagagcgcgaaggtttctctgcagcgccacttaacggtgacatgaaccagcaa
gcgcgtgagcgcacggttgatcgtttaaaaagcggcatgctaaacgttgttattgcaaca
gacgtagcggcacgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccacaagactctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcgattcttttcgttaagcataacgagcgttatttacttaaaaatatcattcgt
catactaaatctgaaatcgcacaagttgaattacctacagctaaagttgttgaagaaaaa
cgtatcaatgccttacaagaaaagcttacgcttgcgcttgaaaacaaagatattactttc
ttcaatgaagtggctgccaacatggcacaaaaacttgagcttgctcctgaagacttagcg
ggtgcgttactgtgtttagcacagcaacaatcaccaattaaagttgaagaagttaagatt
caaccgcgtgagcgtaacgaacgtaatgatcgtaatcctcgtagcaatgaccgtggtcgt
cgtaacgaacgccctgaacgcggtggtgagcgcgctgagcgtaaaccacgcgagcgtaac
agccgtgatgcaggccctatggatacataccgtatcgaagtaggtcgtgagcatggtgtt
caggttaagaacattgttggcgcaattgctaacgaagcagacatttcaagcaagtttatt
ggtgacattcgtcttcacgacagtcacagtacggtacaattaccgcaaaacatgcctaaa
gatgtacttgatcacttccagaaagtgtttatttgtaaacgcccaatgggtatgacatta
acacaagatcaaggcccttctgagccacgcggcgagcgttctgaacgccctgctggtgac
aagaagcgtagctttaataaagatggtcaacgccctgataagcgtagcggccctcgtaaa
gaacgtcgcccagttagctttaccgctaagtaa
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