Piliocolobus tephrosceles (Ugandan red Colobus): 111520166
Help
Entry
111520166 CDS
T07491
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pteh
Piliocolobus tephrosceles (Ugandan red Colobus)
Pathway
pteh03030
DNA replication
pteh03410
Base excision repair
pteh03420
Nucleotide excision repair
pteh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pteh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111520166 (LIG1)
03410 Base excision repair
111520166 (LIG1)
03420 Nucleotide excision repair
111520166 (LIG1)
03430 Mismatch repair
111520166 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pteh03032
]
111520166 (LIG1)
03400 DNA repair and recombination proteins [BR:
pteh03400
]
111520166 (LIG1)
Enzymes [BR:
pteh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111520166 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
111520166 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
111520166 (LIG1)
DNA replication proteins [BR:
pteh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
111520166 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
111520166 (LIG1)
DNA repair and recombination proteins [BR:
pteh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
111520166 (LIG1)
NER (nucleotide excision repair)
Other NER factors
111520166 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
111520166 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DUF1685
DDR
Motif
Other DBs
NCBI-GeneID:
111520166
NCBI-ProteinID:
XP_023038488
Ensembl:
ENSPTEG00000039252
LinkDB
All DBs
Position
21:9884783..9939132
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSDSDSPVKRPGRKA
ARVLGSEGEEEDEARSPAKGQKPAPDCSQVSTPRPATSPENSASLSDTSPTDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSVDEDREAKRKKEEEEVETPEESLTEAEVATEKEGEDRDQ
PTTPPKPLKTSEAETPMESISEPEVATRHELQEEEEQTKPPRSAPKTLSSFFTPRKPAIK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESIRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDRGKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccccctccgaaggcggcactgaaa
gagtggaatggagtggtgtccgatagtgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagcgaaggggaagaggaggatgaagcccgtagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccacgccccgtcctgccacatctcctgaa
aacagcgcttccctctctgacacctctcccacggacagctccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgtggacgaggacagagaagccaaaaggaagaaggaggaggaagaagtggagacccca
gaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacagggaccag
cccaccacacctcccaagcccctaaagacctccgaagcagagactccgatggaaagcatt
tcagagcccgaggtggccacgaggcacgaactgcaggaggaggaagagcagaccaagcct
ccccgcagtgctcccaagacactcagcagcttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaggaggaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggacccatccggttacaatcctgccaagaacaactaccatcccgtggaagacgcctgc
tggaaaccgggccagaaggtcccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgcccggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccccgtcctctacctcagcctcaaccaccttgggcca
ccacagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcagtggcccag
gccacaggtcggcagctggagtccatccgggctgaggcagccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcttccggggtcttcagcaagttccgtgacatcgccaggctcactggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctgcgccttgggctggcagagcagtcagtgctg
gccgccctctcccaggctgtgagcctcacgcccccaggccaagaattcccaccagccgtg
gtggatgctggaaagggcaagacagcagaggccagaaagacgtggctagaggagcaaggc
atgatcctgaagcagacgttctgcgaggtgcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagcccagggattcccctg
aaaccgatgttggcccatcccacgcggggcgtcagcgaggtcctgaaacgctttgaggag
gcagctttcacctgcgaatacaaatacgatgggcagagggcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactggaaagtacccagac
atcatcagccgtatccccaagattaaactcccatcggtcacatccttcatcctggacact
gaagccgtggcttgggaccggggaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaagtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctctctggac
accaaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgtcgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagcccc
cgcccttatgtgcggatagatggtgctgtgactccggaccactggctggaccccagtgct
gtgtgggaggtgaagtgtgctgacctctccctctctcccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcacaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactga
DBGET
integrated database retrieval system
