Paralysiella testudinis: JQU52_07755
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Entry
JQU52_07755 CDS
T07686
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptes
Paralysiella testudinis
Pathway
ptes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQU52_07755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptes03400
]
JQU52_07755 (mfd)
Enzymes [BR:
ptes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQU52_07755 (mfd)
DNA repair and recombination proteins [BR:
ptes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JQU52_07755 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Helicase_C_2
Glyco_tran_WecG
AroM
YmdB
Motif
Other DBs
NCBI-ProteinID:
QRQ80666
UniProt:
A0A892ZG01
LinkDB
All DBs
Position
1490013..1493408
Genome browser
AA seq
1131 aa
AA seq
DB search
MNFPIPAPAQKAVWPDLSPGSLPLLLAEHLPPKQPKIIFTTDAEQALRVQAAWQFFAPQQ
NVLFFPDWETLPYERFSPHQDLVSERLAALWQLKNGQVDVLLVPVATAMQRVVPPAFMLG
RTFWLKRGQTLDIDALKHNLIEAGYSHVTHVVAAGEFAMRGGILDIFPSGSDTPFRLDMF
DDEIDSIKTFDADSQRTLAPVAEIRLLPAHEFPTDADAQKIFRARFREEIAADAARATVY
KAVSNGHFGAGVEYYLPLFFEEPCATLFDYIGSDALLVCLGDVHAEAARFWQEVKSRFAM
AQGDETYPPLPPQHLYLSEDQFGGLIKPYAQVWPQWSASSAHNLPDVAVNRHAEAPLAAL
QRFQAAFNGRVLLCAESLGRRETMQGFMQQHGLNLTAVADWQAFLHSDAPLCLTVAPLAF
GFRQPERHLAVITEADLYQYVARSRHKARRKHAAVSDSMLRDLAEINIGDPVVHEEHGIG
RYMGLVNLDLGEGDNEMMLLEYADAAQLYVPVSQLHLISRYAGAAHENVHLHKLGHGAWH
KAKRRAAEKARDTAAELLNLYAQRAAQQGHQFDLNELDYQAFADGFGYEETEDQAAAIGA
VLKDLTHGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVCVLAPTTLLVEQHAQNFAD
RFADFPVKVAQLSRFNSSKETKAALAGMADGTVDIVIGTHKLVQPDIEFHNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVK
PFSEATIREAMLRELKRGGQVFFLHNEVDTIENMHERLAELLPEARIGVAHGQLRERELE
QVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPEFITKDAEKRLDAIAAADDLGAGFTLAMQDLEIRGAGEILGEGQSGEMVQVGFT
LYTEMLKQAVRDLKKGRVPDLDAPLGVTTDIKLHSPALLPESYCPDIHERLVLYKRLATC
ETEAQINTVHEELIDRFGLPEQPVKTLIESHRLRLLAKEMGIDAIDATTEALTIAFGKNH
KIDPAEIILLMQNNKNYRLAGPEKLRVTAVMEEVDTRIKTVKTVLRQLQGK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaatttccccatccctgcgcccgcccaaaaagccgtttggcctgatttgtcgcccggc
agcctgcccttgctgctggccgaacacttgccgcccaaacagccgaaaatcattttcacc
actgatgccgagcaggctttgcgcgtgcaggcggcgtggcagttttttgcgccgcagcaa
aacgtgctgttttttcccgattgggaaaccctgccttacgagcgcttttcgccgcatcag
gatttggtgtcggagcggctggcggctttgtggcagctcaaaaacggccaagtagacgta
ttgctggtgccggtggccaccgccatgcaacgggtggtgccgcccgcctttatgctgggg
cgcactttttggctcaagcgcgggcaaacgctggatatcgatgcgctcaaacacaatctg
attgaagcgggctacagccatgttacccatgtggtggccgccggtgaatttgccatgcgc
ggcggtattttggatattttccccagcggcagcgacacgccgtttcggctggatatgttc
gacgacgaaatcgacagcatcaaaaccttcgatgccgacagccagcgcaccttggcaccg
gtggcggaaatccgcctgctgcccgcgcatgagtttcccaccgatgccgacgcccaaaaa
atcttccgcgcccgttttcgcgaagaaatcgccgccgatgctgcccgcgccaccgtatac
aaagccgtgtccaacggccatttcggtgccggggtagagtattacctaccgctgtttttt
gaagagccgtgcgccaccttgtttgactacatcggcagcgatgccttgctggtgtgcttg
ggcgatgtacacgccgaagcggcgcggttctggcaagaagtgaaaagccgctttgcgatg
gcgcagggcgacgaaacctatccgccgctgccgccgcagcatctgtatttgtcggaagac
caattcggcggcctgattaagccctatgcgcaagtgtggccgcagtggtcggccagtagt
gcgcacaacctgcccgatgtggcggtaaaccgccatgcagaagcgccgctggccgcctta
cagcgctttcaggcagcctttaacggccgcgtgctactgtgtgccgaaagcctagggcgg
cgcgaaaccatgcagggctttatgcagcagcacggtttaaacctcacagccgtggccgat
tggcaggcttttttgcacagcgatgcgcccctgtgccttacggtggcaccgctggccttc
ggcttcaggcagcctgaacgccatttggccgtgattaccgaggccgacctttatcaatac
gtggcgcgcagccgccacaaagcccgccgcaaacacgccgccgtgtccgacagcatgttg
cgcgacttggccgaaatcaatatcggcgacccagtggtgcatgaagagcacggcattggc
cgctatatggggctggtgaatctggatttgggcgaaggcgacaatgaaatgatgttgctg
gaatacgccgatgcggcgcagctgtatgtgccggtgtcgcagctgcatttaatcagccgc
tacgccggtgccgcgcatgaaaacgtacacttgcacaagcttggccacggcgcttggcac
aaagccaaacgccgcgccgccgaaaaagcccgcgacaccgccgccgagctgctcaatctc
tacgcccagcgcgccgcccaacaaggccatcagttcgacttaaacgagctggattaccaa
gcctttgccgacggcttcggctacgaagaaaccgaagaccaagccgccgccatcggcgcc
gtactcaaagacctcacccacggcaagccgatggatcgcctgatttgcggcgatgtgggc
tttggcaaaaccgaagtggcgctgcgtgccgcctttgtggcggtcatgggcggcaaacaa
gtgtgcgtgctggcgcccaccaccttgctggtggagcaacacgcgcaaaattttgccgac
cgctttgccgattttccggtgaaagtggcgcagctatcgcgctttaacagcagcaaagaa
accaaagccgcactggcgggcatggccgatggcacggtggatattgtgattggcacccac
aaactggtgcagccggacatcgaatttcacaatctgggcttggtgattatcgacgaagaa
caccgcttcggcgtgcgccaaaaagagcagctcaagcgcctgcgcgccaatgtagacgtg
ctcaccctcaccgccaccccgattccgcgcaccctgagcatggcgctggaaggcctgcgc
gatttttcattaatcaccaccgcgcccagccgccgcctggcagtgaaaacctttgtcaaa
ccctttagcgaagccaccattcgcgaggccatgttgcgcgagcttaagcgcggcggccaa
gtgtttttcctgcacaacgaagtggacaccatcgaaaacatgcacgagcgactggccgaa
ttgctgcctgaagcccgtatcggcgtggcgcacggccaattgcgcgagcgcgagctggag
caagtgatgcgcgacttcttgcagcagcgcttcaatgtgctgctgtgctccaccatcatc
gaaaccggcatcgacatccccaatgccaacaccatcatcatcaaccgcgccgataaattc
ggcttggcgcaactacaccaactgcgcgggcgcgtggggcgcagccaccatcaggcctat
gcctacctgctcacgcccgaattcatcaccaaagacgccgaaaaacggctggatgccatt
gccgctgccgacgacttgggcgcaggctttacccttgccatgcaagacctggaaatccgc
ggtgccggtgaaattttgggcgaaggccaaagcggcgaaatggtgcaagtgggctttacg
ctctacaccgaaatgctcaaacaagccgtgcgcgacctcaaaaaaggccgcgtgccggat
ttggatgcgcccttgggcgtgaccaccgacatcaaactgcacagcccggccttgctgccg
gaaagctactgccccgacatccacgaacgcctggtgctgtataaacggctggctacctgc
gaaaccgaagcgcaaatcaacaccgtacacgaagagttaatcgaccgcttcggcctgccc
gagcagccggtaaaaaccctaattgaaagccaccgcctgcgcctgttggccaaggaaatg
ggcatagacgccatcgacgccaccaccgaagcgctcaccatcgcctttggcaaaaaccac
aaaatcgacccggccgagattattttgctgatgcaaaacaataaaaactaccgcctcgcc
gggccggaaaaactgcgcgttaccgcggtgatggaagaagtcgacacgcggataaaaacc
gttaaaaccgtgttgcggcaattgcaggggaaatag
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