Puntigrus tetrazona (Sumatra barb): 122335602
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Entry
122335602 CDS
T08985
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122335602 (upf1)
03015 mRNA surveillance pathway
122335602 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122335602 (upf1)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122335602 (upf1)
5.6.2.5 RNA 5'-3' helicase
122335602 (upf1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122335602 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122335602 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
122335602
NCBI-ProteinID:
XP_043089379
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYMGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaacccagggccagacccagagccagctcgacaaccaggtgaacggg
cctgatggcgttctgcccaacggagaggatgcagtggtgaagactagccaacttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagacctgccggtgcat
gcctgcagctactgcgggattcatgatccagcgtgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctccggcagtcacattgtgaaccacttggtg
agggccaagtgtaaggaggtgaccctgcataaggacggcccgctgggcgagacggtcctg
gagtgctataactgcggctgccgcaacgtcttcctgctcggcttcatcccggccaaagct
gactctgtcgtggtgctgctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctgatccaggaccgctgcttcttgtcctgg
ctggtgaagatcccgtctgagcaggagcagctgagggcccgtcagatcacagcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgacgctggaggacttggag
aaacccggagtggatgaggagcctcagcacgttctgctgagatacgaagacgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcacactgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctacaaaggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccattgagctgcgaagcagtgctggt
gcacctgtggaggtgcctcataacttccaggtggactttgtctggaagtcaacatcattt
gaccgcatgcagagcgccctgaagacgtttgccgtggacgagacctccgtgtccggctac
atctatcacaagctgctgggacacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgctcagggcctgccggacctcaaccactcgcaggtttacgccgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcccccgggaaccggcaagacggtc
acctccgccaccatcgtctatcatctggccaggcagggcaatggtccggtgctggtttgt
gctccgagtaacatcgcggtggaccagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgcgaggccatcgattcgcccgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgcccgagttgcagaaactgcagcagctg
aaggacgaaaccggcgagctgtcgtcgtccgacgagaagcgctaccgagctctcaaacga
accgctgagagagagctgctcatgaacgcagatgtgatctgctgcacgtgcgtgggagcg
ggtgaccctcgcctggcgaagatgcagttccgctccatcctcatcgacgagagcacgcag
gccacggagcccgagtgcatggtgccggtggtgctcggggccaagcagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgcctgcaggtg
cagtaccgcatgcatccggccctcagcgccttcccgtcaaacatcttctacgagggctct
ctgcagaacggggtcaccgccgctgatcgcatcaagaaaggcttcgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcagggccaggaagagatcgcaagctct
ggcacctcctatctcaataggaccgaggccgccaacgtggagaagatcaccacccgcctg
ctgaaggccggagccaaacccgaccagatcggcatcatcacgccgtacgagggccagcgc
tcgtacctggtgcagtacatgcagttcagcggctcgctgcacaccaagctataccaggag
gtggagatcgccagcgtggatgccttccagggcagagagaaggacttcattatcttgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccgcggcgtctcaat
gtggcgctaaccagggccagatatggtgtgatcatcgtgggcaacccgaaggctctgtcc
aagcagcctctctggaaccacctgctcaactactacaaagagcagaaggttctggtggaa
ggacctctgaacaacctgagagagagcctcatgcagttcagcaaaccgcgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtactgccatgtatgacgcaagggaggcc
atgattcctggatctgtgtatgatcgcagcagcaccgggcgtccgtctaatatgtacttc
cagacccacgaccaggtcggcatgatcgggactggaccgaacccgatgggctccatgaac
atccccatccccttcaatctggtcatgccgcccatgcctccccctggatacttgggccag
gtgaacggacctgctgccggtcgtggtgctcctaaaggtaagaccgggggtcgcggaggt
cgccagaggaaccgtggcactgggaatcacggcagcggacaggctaacatgccaaacagc
caggccagtcaggacctggtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcgcagatgagccagcctggactgtcccagcccgagctctca
caggacagctacatgggtgatgagttcaaatcccagatggatgtggcgctttcccaggat
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
