Puntigrus tetrazona (Sumatra barb): 122346595
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Entry
122346595 CDS
T08985
Symbol
chd6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptet03036
]
122346595 (chd6)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122346595 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
122346595
NCBI-ProteinID:
XP_043097258
LinkDB
All DBs
Position
6:complement(25407939..25442336)
Genome browser
AA seq
2966 aa
AA seq
DB search
MSGAGVSRRRHGDQEKMKIQKKDKQMSATHVLKHTPSAAASNASDQNAQTFPIGHLGKEQ
LRIIGGPPNHCMAHPKHSGLREAGSAASSHSLRPLSINSEEDDGGGGARVKKKRRKKDKK
ETEWHKDEESNAKPKRREQKEGKELLVRKAKVAKEQKDHKKREPKAQKEVKKVKKGQDVK
VKTQAKNTATHPPSKRGRKPKEQGAMPPEKKKKGKRKSDAVLEMVESDDTTSLSTLATGE
ESIDPMDNTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRIAAMSSSTLAWQAEE
PPEDEANIIEKILAVRTVKKEISPDEPPDEMEEFYVKYRNFSYLHCKWATLEELEKDPRI
SQKIKRFRNKQAQMKHIFTEPDEDLFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKWCS
LSYEESTWELQEDVDPVKIREFEDLKQIPEIKHVERPLPEQWQKLEKSREYRNGNQLREY
QLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNW
EREFRTWTEMNVIVYHGSQISRQMILQYEMYHRDEQGNMVSGQFKFHGIITTFEMIMADC
PELKKINWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFL
EPSQFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELT
NIQKKYYRAILEKNFAFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFKK
TYSSEAADFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRRY
AYERIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLXAADTCIIFDSDWNPQ
NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGV
QQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKA
SFVSSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDE
LMEFSELDSDSEERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWH
LTERDMEVLCRALLVYCVRHYKGDDKIKSFIWDLITPTKDGHNQALQNHSGLSAPVPRGR
KGKKLKNQLSPPELKNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVL
GEAANQALEGIPASKLEVTLPDIDYIEIPTIWWDAEADKSLLIGVHKHGYERYNAMRADP
ALCFLERVGMPDVTALTVEQSGAETALDATDSISKSDEIKEENDIKSEELEEKVEIKEEP
MSEETGKNDSTMTGGFIGSLAGDLVAEVMEQGRIQWPAGSALTARLRRLITAYQRYTRRE
PLRHDFLLHEGIAPVAWQIGEFRHCTTEPDPLFLEWQRRWTRREQADFYRTVSSFGVVYD
PDKKTFDWNQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGNVDPSLFVEPI
TEERAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLLIGVAK
HGLSRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDANLGHCQSPQPPD
YHPTPSHHTQTQLVHTHGHHQSTEVVASESGSSLGIGTGNREGFLDCPPLDDSLELGSLQ
HEGLTSDTLHGKSGKEAFNGFPFNSATGGQNMLNSYGVQGELNGSQGDMADSIAGKLRSD
VLVGEQGSSEETGLMAPSVELDELQTPWESSDHTETSDMFNETDPILGAPTLEPSFLDAP
QPEDGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGETSVDQTDLSASLPEY
VPPPPLGLPDVSLDQTDPISEEQEDKLSDSNITHGVPSPEEGAESVSFHFEKEDLSPDSP
KTKDTQDEIDKMPSIDSPRDNCLEESQKEDCQVQFGDSNRDMKDPCEVALEEPYEKPLTE
PEKVPLEESYDLTCDETLQEPCEGFQQDTAEQQLVEETCKEPPEPIEDCNLTNTTLSTDY
PMPSSLPSSPTTLPDTSVSPGLDVVPKQEFLVDPVVSDVKPEPDSTTQTPHLEQTEVLEV
KDKIKDEGAKAPALLGDVDGPRFALPMCEMADSVHEIREPTIAQLLQEKALFSFSEWPKD
RVIINRIDSICHTILKGKWPSSSQQYESPTSLANTCVPSSAHQRAGFLPTRMPISQSLNF
NLSHTVPHLPKERLVAPAFLPDLKRPRRGFEFEAEVLAKPSHLGEKIQVGVPHRANALLL
NGWQDAAIDLSKPTELTVGGDSGPIGQMSHTVQSASHKITGIGSIQGSLGLDMAGILQAG
LIHPVTGQIVNGGLRRDDSMLRRRRGRRRNVDTPDLSFIKGRSVNLPEQQSGSESISHPV
VSSTSSQSEGPPATPTTLPSQPSASSPAPPSASETLNVSIDRETANKGLLEWLRQNPNYN
MELSAFPSQNANILHSFLERPKQRRHRCKDPSKLDVNSLTGEERVPVVHRNTGRRLGGAM
APAIKELSRWLDANSEYSVAPDWADVVKHSGFLPEGKFTRILSGPVCRDPGPRRRGRRPR
SEMPKAPELAAGMGPLFMNGGLIGSMDLVSLPNLRNVPGIPLTGIMGFPHGFATAVPSGE
DAKNGLSMLPMMLHSMAAVQPPMYSAHMSGMINQPLSTATSTATASSTSASVTSSNSATV
TSTSSPADSSDSAPQRENASSPMSTENGNKEDSKQGAEDKKVSASVSTAAATSSSSSSSI
TSTGSHLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGSPKRKRKKIREEVA
EEGIGNVGVHIDGVESKGVKDEQTPEQKSKEGGMEEGRPDLDLAQVKDPSDPTRGPSEDK
STGEKDKDEMGEETESNAQGSCDGGD
NT seq
8901 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagccggcgtgtccagacgcagacacggagatcaagaaaaaatgaaaatacaa
aagaaggacaagcagatgtctgccacccatgtactaaagcacactccatccgctgctgcc
tcgaatgcctctgaccaaaacgcacaaacatttcccatcggccacttgggcaaagaacag
ttacggatcatcggagggccgcccaatcactgcatggctcacccaaagcactctgggtta
cgggaggcggggtctgctgccagcagtcacagtctccgccctttatcaatcaacagcgag
gaggatgatggagggggcggggccagggtgaagaagaaacgaaggaaaaaagacaagaaa
gagacagagtggcacaaagatgaagagagcaacgctaaaccaaagagaagggagcaaaag
gaagggaaggagcttcttgtgagaaaggcaaaggtggcgaaggaacaaaaggatcataag
aagagggagccaaaagcccaaaaagaggtcaaaaaggtcaagaaaggtcaagatgtaaaa
gtgaaaacacaggccaagaacactgcaacacatccaccctccaaaagagggaggaagcca
aaagagcagggtgccatgcctccggaaaagaagaagaagggaaagaggaaaagtgatgct
gtacttgagatggtggagagcgatgacacaacctctctcagcacgctcgccaccggagag
gaaagcatcgaccctatggataacactaagaggcgatcagggcgtcaagtgaagcggcgg
aagtataacgaagatcttgatttcaaggtcgtggatgatgacggggagaccatcgctgtg
ttgggcgcgggccggattgccgccatgtcttcctctaccctcgcctggcaggctgaggaa
ccccctgaagatgaggctaatatcattgagaaaatacttgcagtgcgaacggtcaagaaa
gagatatcccctgacgaaccaccagacgagatggaggagttttacgtcaagtacagaaat
ttctcctatctgcactgtaaatgggcgaccttggaggaactggagaaggacccacgcatt
agccaaaaaatcaagcgcttcagaaacaagcaggcgcaaatgaagcacattttcacagag
ccggatgaagacctgtttaatccagattatatagaggttgatcgggttttagagattgct
atcaccacagatacagaaactggagaggaagttacacactacctggtgaaatggtgctct
ttgtcatatgaggagagtacctgggagcttcaggaagatgttgaccctgtgaaaatcaga
gagtttgaagacctaaagcaaattccagaaatcaagcatgtggaaagacctctacccgag
cagtggcaaaaactggagaagtccagagaatacagaaatgggaaccagctgcgagaatac
cagttagagggaatgaactggctccttttcaactggtacaacaggaaaaactgtattttg
gctgatgagatgggccttgggaagaccatccagtccatcacgttcctctatgagattttc
ctcatgggtctaagaggaccttttctaatcatcgccccgctctccaccatcaccaactgg
gagagagagttccgcacatggactgaaatgaacgtcatcgtctatcacggcagccagatc
agtcggcaaatgatactgcagtatgagatgtaccaccgagatgaacagggaaacatggtg
tctggtcagtttaagtttcatgggatcatcaccacgtttgaaatgataatggccgactgt
ccagagctgaaaaagattaactggcgctgcgtggtgatcgacgaggcccatcgtctgaaa
aaccgcaactgtaaactactggagggactcaaactcatgaacctggaacataaagtcctt
ctcacgggaactcctttgcagaactcagtcgaggaactcttcagtctgcttaactttctc
gaaccctcacagttcccttcagagaccactttcttggaggagttcggagacctgaagacg
gaggagcaggtaaagaagctgcaagccattctgaagcccatgatgttgaggagactgaag
gatgatgtggagaagaatctggcccctaaagaggagacaatcattgaggtggagctcact
aatattcagaagaaatactaccgcgccattctggagaaaaactttgccttccttgccaag
ggagcaaaccagcacaacatgcccaacctcatcaacacaatgatggagcttcgcaagtgc
tgcaatcacccatacctcattacaggtgctgaagaaaagatcctagagagcttcaagaaa
acctacagttctgaggctgcagattttcagctgcaggcaatgatccaggctgctggtaaa
ctagtgcttattgacaagttgctgcccaaactgctggccggaggacataaagtgctggtg
ttttcccagatggtccggtgcctggatatactggaggactacctcattcagaggaggtat
gcatatgaacgtattgatgggagagttcgaggaaatctacggcaggctgccatcgatcgc
ttcagtaaggtggactctgaccgcttcgtgttcctcctctgtacacgagcaggaggtctg
ggcatcaacctcnacgctgctgacacttgtatcatatttgactccgactggaacccgcag
aatgacttgcaggctcaagctcgctgccaccggatcggtcagagcaaagcggttaaggta
tatcgccttatcacacgaaattcatatgagagggagatgtttgacaaagccagtctgaaa
ctgggattggacaaggctgttcttcaagacatcaaccgcaagggcagtctcaacggggtt
cagcagctgtctaagatggaggtggaagatcttctcaggaagggagcgtacggggcactt
atggatgaggaagatgagggctctaaattttgtgaggaggacattgatcaaatccttcag
agacgtacacagaccatcacaatccagtctgaggggaaggggtcaacttttgccaaggct
agctttgtgtcttcagggaaccgtacagacatttctttggatgatccaaacttctggcag
aagtgggccaaaattgcagaactggaaattgactccaaggcagaaaaggagagtctggtg
atcgacacccctcgcgtacggaagcagacgcgtcactataattcatttgaggacgatgaa
ctcatggagttctctgaactggacagtgactcagaggaacggccctgtcgcacaagacgt
ctcagcgatcgcaacagacgatacctccgagcggagtgcttcagagtggagaaaaacctt
ctcattttcgggtggggtcgctggaaggatattctcaatcatgggcgctttaaatggcac
ctgacggagagagacatggaggtgctgtgcagggctcttctggtctactgtgttcgccat
tataagggagacgataaaattaagagcttcatctgggatctgatcacacctactaaagac
ggacacaatcaagcactacaaaaccactcaggtctgtctgctcctgtcccacggggtcgt
aaaggcaagaaactgaagaaccagttgagtccccctgagctaaaaaatgcagactggctg
gtccactgtaacccagaggttgtgcttcaggatgacagctacaagaaacacctcaaacaa
cactgcaacaaggtgcttctgagggtgcggatgctgtactatttgaaggttgaagtgctg
ggggaagctgctaatcaggctcttgaagggatcccagctagtaagcttgaggtaaccctc
cctgatattgactatattgagatacctactatatggtgggatgctgaagcggataaatca
ctgcttattggagttcacaaacacgggtatgaaaggtataacgccatgcgtgcagaccct
gctctgtgtttcctggagcgagttggtatgcctgatgtcactgcattgacggtagaacaa
agtggagcagaaactgccttagatgcaactgatagtatcagcaagagtgatgaaatcaaa
gaggagaatgatattaagtctgaggaattagaagagaaagtagagatcaaggaggaaccc
atgtcagaggaaactgggaaaaatgacagtacaatgacaggaggctttataggatctctc
gcaggcgaccttgttgcagaagtgatggagcagggacgaatacagtggccggcaggttcg
gctcttacagcacgcctgcggcgcctcattactgcctatcagcgttatacacggcgtgag
ccgcttcgtcatgatttcctcttacacgagggaattgcacctgtggcctggcaaatagga
gagtttaggcactgcactactgagcctgacccactctttttggagtggcagcgaagatgg
acacgtcgagagcaggctgacttctatcgtacagtgtcttcgtttggagtagtgtatgat
ccagataagaagacttttgactggaaccagttccgtgcccttgctcgattagagaggaag
acggatgaaagcttagagagatatttccacagttttgtttcaatgtgtcgaactgcatgt
agacttccgcccagaaaagatgaaggtaatgtggatccttcactgtttgtggagcctatt
acagaagagcgagctgcccgaacattataccgtattgagcttctgagaaaggtccgtgag
caagtattgcgccacccactcctgggagctcgactgcagctttgtcgccctagcttgtat
ttgcctgtctggtgggagtgtggcaaacatgaccgtgatcttctcattggggtcgctaaa
catggcttgagtcgaactgatttctacatcctcaatgacccccaattatccttccttgag
gcccaccggaactatgttcacaaagaaaaccacagatacccagtcccaggcttgccccac
caccattgctgcttatatgatgccaaccttgggcattgtcagtccccacaacctccagat
tatcaccccacaccttcacaccacacacaaacacaactcgtccacactcatgggcatcac
cagtcaacagaagtggtagcatctgagtctggaagttccctagggataggtacaggaaac
agggaaggatttttggattgtcctccattggatgactctctggaattggggtctttgcaa
catgaaggcttgacatcagacacactacatggcaaatctggtaaagaggccttcaatgga
ttcccctttaattctgcaaccggtgggcagaatatgctaaattcgtatggtgtgcaaggg
gagttaaatgggtctcaaggagacatggcagactcgatagctgggaaacttcgcagtgat
gttctggtgggagagcaaggatcctcggaggagactggattaatggctccttctgtggag
ctagatgagcttcaaactccttgggaaagctcggaccatactgaaacctctgacatgttc
aacgagactgatcccatcttaggagctccaactttagaacccagctttctcgatgctcct
caaccagaggatggacgggagggtgatgaaacgctcacagactgtttgagcatgcctagt
tcagactctcaaagcaacccagtcgaaccactggcaccgagcttcatgttgttcaaagac
cttaatgttggagagacttctgtggatcagacagatctgtcagccagtcttccagaatat
gttccaccaccgcctcttggactcccggatgtgagtcttgatcagacagatcccattagt
gaggagcaagaggacaagctcagcgattccaacatcacacatggggttcccagtccagaa
gaaggagctgaaagtgtatcgtttcattttgagaaagaagacctttctccagacagtccg
aagacaaaggatactcaagatgagattgacaagatgccttcaatagactctccaagggac
aactgcctcgaggaatctcagaaagaggactgccaggtgcaatttggcgactccaataga
gatatgaaagatccttgtgaagtggccttggaagaaccttatgaaaagcctctaacagag
ccagaaaaagtgcctttagaggagtcttatgatttaacttgtgatgagaccctacaggaa
ccatgcgaagggtttcagcaagacacagcagagcagcagttggtggaagaaacctgcaaa
gaaccgccagagccaatagaagactgcaatctaactaacactactctttcaacagattac
cctatgccttcttcactcccatcatctccaactaccttacctgatacctctgtatccccg
ggccttgatgtagttccaaaacaagagtttctcgtggatccagtggtgtcagatgtaaag
cctgagccagatagcactacacagacccctcaccttgagcagactgaagttttggaagta
aaggacaagataaaagatgaaggtgcaaaggcaccagcattattgggagatgttgatgga
ccacgctttgcattgcccatgtgtgagatggcagacagtgttcatgaaataagggaacca
accattgctcagcttctacaagagaaagcactcttctccttctcagagtggcctaaggac
agagtgattatcaaccgtattgacagtatctgccacaccatcttaaaggggaagtggcct
tcctccagtcaacaatatgagtctcccacctcattggctaacacctgcgtgcccagcagt
gcccaccagagggcaggatttctgcctaccagaatgcctatatctcagagccttaacttt
aacctctcacacacagtaccccacttaccaaaggagcgattagtggccccagcatttctc
cctgacctcaaacgtccgagacgtgggtttgaatttgaggcggaagtccttgccaaacca
agccatcttggagaaaagatccaggttggcgtgcctcatcgtgctaatgctctcctcctt
aatggctggcaggatgccgctattgacctctccaaaccaacagagctaacagttggtgga
gacagtgggccaatcggtcagatgagccacactgtccagtcagcgtcccataaaatcacc
gggataggctccatacaaggctcgctgggattggatatggctggcattttgcaggctggc
ctgattcaccctgtcacggggcaaattgtcaatggcggtcttcgtcgtgatgattcaatg
ttgagacggaggagaggacgaagaagaaatgtggacactcctgatctcagctttataaag
gggcgaagtgtgaacttgcctgaacaacagagcgggtccgagagtatcagccaccctgtt
gtgtcctccacatcgtcccagtcagaaggccctccagccaccccaacgacacttccttct
cagccttcagcttcctctccagcgcctccttcagcctcagagaccctgaatgtgagcatt
gacagggaaacagccaataaaggcttattggaatggctccgacaaaaccccaactacaac
atggagctttctgcttttccgtctcagaatgcaaacatattgcacagtttcctggagcgt
ccaaaacagagacggcatcgctgcaaagacccatcgaagcttgacgtcaactctctaacc
ggggaagagagagtcccagtagtgcacagaaacacaggccgcaggcttggaggcgctatg
gctccagcaattaaagagctctcccgatggctggatgcaaactcagaatactctgtggct
cctgattgggcggatgtggtgaagcactcgggttttctaccggagggtaaattcacacgt
atcctctctggacctgtgtgtcgggatcctggtccgcgaagaagaggcagacgaccccgc
agtgagatgcccaaagcccccgaactcgcagctggcatgggtccgctcttcatgaacggc
ggcctcattggcagcatggatctggttagcttacccaatctccgcaatgtccctggcatc
cctctaaccggtatcatgggctttcctcacggttttgccactgctgtaccgtcaggagag
gatgccaagaatggactcagcatgctgcccatgatgctccacagcatggcggccgtgcag
ccgcccatgtacagcgctcacatgagtgggatgataaatcaaccgctgtccacagcgaca
tccactgcaactgcatcctccacttcagcgagtgtgacttcgtcgaactccgcaaccgtg
acctcaacctccagcccggcggatagttcggattctgcacctcagcgtgaaaacgcaagc
tctccgatgagcacggagaacgggaataaggaggactcaaagcaaggtgcggaagacaag
aaagtgtctgcttcggtgtctacggctgcagccactagcagcagcagtagtagtagcatc
acaagcaccggcagccatttgacctttaacccctttctaatcccgggaatgtcacatagt
ctgttgtatccgcatatgttcttgccaccgggcagtataatggctctgcctgctatgcct
gcggcggacagcacgggcagccccaagaggaagaggaagaagattagggaggaagtagca
gaggagggaatcggcaacgttggtgtgcatatagatggtgtggaatcaaagggggttaaa
gacgaacagacacccgaacaaaagagcaaagagggcggaatggaagaaggcagacctgat
cttgatttagctcaggtcaaagatccttctgaccctacaagaggtccttctgaggataaa
agtactggggaaaaggacaaagatgagatgggagaagaaactgagtcaaatgctcaaggc
tcttgtgatggtggagactag
DBGET
integrated database retrieval system
