Puntigrus tetrazona (Sumatra barb): 122349712
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Entry
122349712 CDS
T08985
Symbol
lig4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122349712 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122349712 (lig4)
Enzymes [BR:
ptet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122349712 (lig4)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122349712 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122349712
NCBI-ProteinID:
XP_043101791
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All DBs
Position
7:3921259..3925655
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AA seq
910 aa
AA seq
DB search
MEGASKSDATPQTAVAAQVPFIDLCTVLENIQKTKLRPDKSKILKDFIDSWRNFHAALHK
DNSNTTDSFYAAMRLIVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFALMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVTTDLNKVCRQLHDPSVSL
SEVSIDMFSAFKPMLAAVANVRQIEKQMGNRTFYIETKLDGERIQLHKAGDVYKYYTRNS
YEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLM
DDSDLQTCFCVFDVLLVNNQKFANEPLKKRYEILETIFTPVKGRIQLVTKIECKTMQDVV
NSLNEAIDNLEEGIMVKDPMSIYKPDKRGEGWVKIKPEYVDGLMDELDLLIVGGYWGKGR
RSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNRNNPP
XAILCGTEKPEVYIEPRNSVIIQVKAAEIVSSEMYKTNCTLRFPRIERIREDKEWYQCMT
LTELSQFRSRASGKLASRHLHIQEDQPEKKKHRFVAKPKKTIGVIDHFKSQDLSAVIKET
DMFEDVEFCVINGNEENSKAELEKVVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLISSD
QHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTRDHFAEGYDQYGDSYYVDTDEQQLRE
VFERIGPTEEAECSSVAQIEADNAWDNLPTSVFRPYTAYFDRCADLGDPKTIIKGTSLDT
RALEFRFHGGTVVEKLREGISHVIVESERRTLDLKTLRRLHTKKFKIVRESWVTDSIKAG
HVVDETDYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgcctcaaaaagtgatgccacaccacagacggctgttgctgcacaagttccg
ttcatcgacctctgcacagttctggagaacatccaaaagaccaaacttcgaccagacaaa
agcaaaattctaaaggattttattgattcttggaggaacttccatgcagcacttcacaag
gacaattctaataccacagattcattttacgcagcgatgcgtcttattgtgcctcaattt
gagcgagagcgaatggcttacggtataaaagaaaacatgcttgccaaactatacattgaa
gttttaggcctacctaaaaatggacctgaggcaaacaaacttctaaattacagagctcca
accacgagtcaaggagaagcaggggactttgccctcatggcctactttgtcctgaagaaa
aggtgtacaagtcaagggaatttaagcattaaagaagtcaatgacttcttggattccgta
gctatcaacaatgctagcaaacagaaagatcaagtgaagaaaagccttttgcatctgata
acccagagttcagctttggaacaaaagtggctcattagaatgatcctcaaggacatgaaa
cttggtatcagcaaggagacagtacttcaggttttccatccagatgcagcagaactctac
aatgtcaccacagatctgaataaggtctgccgacaacttcatgatccatctgtgtccctc
agtgaggtctccattgatatgttttctgcctttaaaccgatgttggccgctgttgccaat
gtgagacagatagagaagcaaatgggcaaccggacattctatattgagacaaagcttgat
ggtgaacgcattcagctgcacaaagctggagacgtttacaaatactatacgaggaactct
tatgagtacacgcaacagtttggggcctctccactagagggctccctcacaccatacatt
cacaacgtctttaaacctcatgtggtaaactgcatactggatggagagatgatggcttat
aaccctacgactgagaccttcatgcagaagggcagcaagttcgatattaaaaggttgatg
gatgactctgatttgcaaacctgcttttgcgtgtttgacgtcttgttagtaaacaatcag
aagtttgccaatgaacctctaaagaagcgttacgaaattcttgagactatatttacgcca
gtcaaaggtcgtatacagctggtcacaaaaattgaatgcaaaacaatgcaagacgtggtg
aattctctcaatgaggccattgacaatctagaagagggaattatggtgaaggatcccatg
tccatctataagccagataaacggggagaaggttgggtgaaaattaagcctgaatatgtg
gatggtctgatggatgagctcgatctgctaatagtgggaggctactggggtaaaggccgg
agaagcgggatgctctctcattttctgtgtgctgtagcagaggtgccaagtccaggggag
aagcctacggttttccataccctctgccgcattggatcaggctacaccatgaaggaactc
tacgatcttggtctgaagttggccaaacattggaaggtttacaacagaaataatcctccg
nctgccatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactcagtg
atcatacaggtcaaagctgcagagatcgtctccagtgaaatgtataagaccaactgcaca
ttacgttttcccagaatagaaagaatcagagaagacaaagagtggtatcagtgcatgacc
ttgactgaactgagccagttccgctccagagcttctggaaagctggcatccagacatcta
catatccaagaggaccagcctgaaaagaagaagcacaggtttgtagccaagcccaagaag
acaatcggagtcattgaccactttaaatctcaggatttatcagcagtcatcaaagagacg
gatatgtttgaagatgtggagttttgtgtgataaatggtaatgaggaaaattccaaggca
gagcttgagaaagttgtggcccgctgtggaggcattgttgtgcagaaccctgggaaagat
acgtactgtgtgattgcagctgtgcagaacatgagagtaaagaacctcatctcctcagac
cagcatgatgtggtgtgggctacttggcttctggagtgtctggaaaataagcaggttata
ccatggcaacctcgtcacatgatccacatgtcaccttccaccagggaccacttcgctgaa
gggtatgatcagtatggagacagttattatgttgacactgatgaacaacagctgagggaa
gtctttgaaaggattggcccgacagaagaagctgaatgttcatcagtggcacagatagaa
gcagataatgcctgggacaatttgcccactagcgtttttaggccttacactgcatacttt
gaccggtgtgccgacttgggagatccaaaaaccatcataaagggtacaagtttggacaca
cgtgccttagagttccgatttcatggtggtacggttgtggagaaactgagggaaggaatc
tcccatgtcatagtcgaaagtgagagaagaactctggacttgaagacgctgaggcgacta
catactaagaagttcaaaattgtcagagaatcttgggtgaccgattccatcaaagcaggt
catgtagtggatgagaccgactacctaatataa
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