Puntigrus tetrazona (Sumatra barb): 122362730
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Entry
122362730 CDS
T08985
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122362730 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
122362730 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122362730 (thoc1)
03041 Spliceosome [BR:
ptet03041
]
122362730 (thoc1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122362730 (thoc1)
Spliceosome [BR:
ptet03041
]
Complex C
Other components
EJC/TREX
122362730 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122362730 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
122362730
NCBI-ProteinID:
XP_043120235
LinkDB
All DBs
Position
2:complement(3664397..3673250)
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AA seq
655 aa
AA seq
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MSPPSHFDFTEARDKFTAATKSAVDTRNCKPLTNAFGHLPGNETEKKATLDQALRGVLEE
QIVKQKVNVEDFLSLIYISIDGVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNVTVFNKNEQDSTLGLQRTEVKEEGMEVEEGEMGDEDAPAPCAIPIDYNLYRKFWT
LQDYFRNPVQCYDKFLWMTFLKYSDETLAVFKSFKLDDMQASKRKLEEMRTAAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGCVLNDDQSLWIEDTTKL
VYQLLRETPPDGEKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP
EDFLGKGPDRKILMGNDELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAIEQADPSNM
VEEEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDIPS
EEIKTGEEDDDENGDNLLKDSNDSPSIQSKAVTNSQMDEIAAKLGSQWKTLADHLDMSEK
EIRVIESDSEDPELQAKMLLVAWQDREGPQATMESLVTALNSAGFSNVTEGLSET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgtctcacttcgacttcactgaagccagagataaatttacggctgccact
aaaagtgctgtggataccaggaactgtaaacccctgaccaacgctttcggtcatctacct
ggaaatgaaaccgagaagaaagccactcttgaccaagccctgcgtggagttcttgaagag
cagatagtgaagcagaaagtcaacgttgaagatttcctttccctgatctacatcagtata
gacggcgtgactgaaggcatctgctctgctaccacaccctttcttcttctgggggacgtt
ctcgactgccttcctctggaccagtgtgacaaaatcttctcgtttgtcgaagagaatgtg
tctacgtggaaatctaacaccttttactctgccggaaaaaattacttgctaagaatgtgc
aacgacctgctcaggaggctctctaagtctcagaacacggtgttttgtggacgaatccag
ctgtttttagcacgcctctttcctttgtcggaaaaatcaggcctgaacttacagagtcaa
ttcaacctcgataacgttactgtattcaacaaaaatgagcaggatagcacacttggactg
cagcgcacagaggttaaggaggaagggatggaggtggaggagggagagatgggtgatgaa
gatgcacctgctccctgcgccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgtgcagtgctatgacaagttcttatggatgaccttc
cttaagtattcagatgagacgctagctgtgttcaagagcttcaaactggatgacatgcag
gcgtcgaagagaaagctggaggagatgaggaccgcggccggagaccacgtctactttgcc
aagttcctcaccagtgagaaattgatggacctccagctgagtgacagcaacttcaggcga
cacattctgcttcagtatctcatcctcttccagtatctcaagggccaggtcaagttcaag
agttccggctgtgttttgaatgacgatcagtctttgtggatcgaggacacgaccaaacta
gtctatcagctgctgagagaaacccctccggatggtgagaagtttgcgtccatggtagag
cacatcttgaacacggaagagaactggaactcttggaaaaatgaaggctgtccgagcttt
gtgaaagaaagaccagcagagaccaaacccatccgtcccagcagaaagagacaggcacca
gaggactttttgggcaagggacctgatcgcaaaatcctcatgggaaacgacgaactcacg
aggctctggaatctgaaccctgacaatatggaggcctgcaagtcggacagcagggagttc
atgccgtcgctggaggacttcttcgaggaagctatcgaacaggcagatccatcgaacatg
gtggaggaagaatacaaagtcgtgcgtaactcaaactacggctggcgggccttgcgattg
ctctccaggaggagtcctcacttcttccagcccaccaaccagcagttcaagagtctggcg
gactatctggaaaacatggtcatcaagctggctaaggagcttcctaaagacattccttct
gaggagataaaaacgggtgaggaggatgatgatgagaacggagataacctgttaaaagac
agcaatgacagtcccagcatccagagcaaggccgtgaccaacagtcagatggatgagatc
gctgccaagcttgggtcccagtggaagacgctggcggaccacctggacatgagcgagaag
gagatccgcgtgatcgagtcggacagcgaggacccagaactgcaggccaagatgctgctg
gtggcctggcaggaccgagaaggccctcaagccacgatggagagcctggtcacggctctg
aactctgctggtttcagtaacgtcacagaaggcctcagcgaaacataa
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