KEGG   Pseudonaja textilis (eastern brown snake): 113448488
Entry
113448488         CDS       T09005                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ptex  Pseudonaja textilis (eastern brown snake)
Pathway
ptex03030  DNA replication
ptex03410  Base excision repair
ptex03420  Nucleotide excision repair
ptex03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113448488 (LIG1)
   03410 Base excision repair
    113448488 (LIG1)
   03420 Nucleotide excision repair
    113448488 (LIG1)
   03430 Mismatch repair
    113448488 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptex03032]
    113448488 (LIG1)
   03400 DNA repair and recombination proteins [BR:ptex03400]
    113448488 (LIG1)
Enzymes [BR:ptex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113448488 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     113448488 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113448488 (LIG1)
DNA replication proteins [BR:ptex03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    113448488 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     113448488 (LIG1)
DNA repair and recombination proteins [BR:ptex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113448488 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     113448488 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     113448488 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Other DBs
NCBI-GeneID: 113448488
NCBI-ProteinID: XP_026574980
Ensembl: ENSPTXG00000009151
LinkDB
Position
Unknown
AA seq 941 aa
MVSFSLIKIIMHSVALRMGKNMYNHVYLCLNRSFFQPLARVKSEKEKTEDNHLEDVLISQ
KKLVNGSELCEDFAVNSASKKAPKVLKSDDGEDSVELDRKDAQADDNKLSPDCVPEQKIS
EESISPSTSPTTSNSATSVSIPRRKTARKQLSKRKPEEDDNSDYSHENRSSKRWKEDLDG
GDSEDKTNEKPVEVEEVKSENATLVEHKTDKNAKEKIPDSSKPSSKSISSFFAPKKSSVK
IEKKQASVVSENMPIPKCLNKVSNDESKNMAENFLKPSLTLEPAEYNPTKSSYHPVHDAC
WGPGQKCVPLRIPYMAVARTFEYIEEESARLKIIETLSNLFRSLIVLSPQDLLPCVYLCL
NRLGPAYEGLELGIGKTILMKALAQATGRQLDQIKAEAAEKGDLGIVAENSRTTQGTVFA
PPKLGAAAVFGKLQAIGHMAGSSSMNKKIDIIKSLFVACRHSEARYVARSLEGKLRIGLA
EQSVLSALAQAVSLTPPGQKFPPDVLDAAKGKSADARKAWLDERALIVKQAFCELPNYNI
IVPVLLEHGVESLPQYCKITPGIPLKPMLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQ
IHILENGEVHIYSRNQENNTTKYPDIVTRVPKVKNSTVESCILDAEAVAWDPVSKQILPF
QVLTTRKRKDVDAAEIRVQVCIYAFDMLYLNGISLVQKPLSQRRTLLHNSFTEVEGQFLF
ATSMDTSNVDEIAEFLERSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGD
TLDLAVIGAYLGKGKRAGTYGGFLLACYDEESEEFQSICKIGTGFSDEDLEKLHNSLKDY
VIPQPRPYYRWGGTAEPDHWLEAQHVWEVKCADLSISPIHRAASGLVDEEKGISLRFPRF
LRIRDDKKPEEATSSAQVAELYQRQQQIQNQLPLEKDDDFY
NT seq 2826 nt   +upstreamnt  +downstreamnt
atggtatcattctctcttataaaaattattatgcactctgtagccctgagaatggggaag
aatatgtataaccatgtttatttatgtctgaacagatcattcttccagcctctggcacga
gtaaagtctgaaaaagaaaaaacagaagacaaccacttggaagatgtgcttatttcacaa
aagaaattagtaaatggttcagaactctgtgaagacttcgcagtgaactctgcatcaaaa
aaagctcctaaggtccttaagagtgatgatggagaagattctgtggaattagatagaaaa
gatgcacaagcagatgacaacaagttgagccctgactgtgttcctgagcaaaagatctct
gaagagagcatctctccaagtactagcccaactacctccaattcagccacatctgtcagt
atcccaaggcgcaaaactgcccgcaagcagctctctaaacgtaaaccagaagaagatgac
aacagcgattattcccatgaaaatcgcagtagtaaaagatggaaggaagaccttgatggt
ggtgattctgaagataaaaccaatgagaaacccgtggaagtggaagaagttaaaagtgag
aatgcaacattggtggagcataaaacagacaaaaatgcaaaggaaaaaatcccagattcc
tctaagccatccagcaagtccatttctagtttctttgctcccaagaaaagttctgtgaaa
atagaaaagaagcaagcatctgtagtatcagaaaacatgccaataccaaagtgtcttaat
aaagttagtaatgatgaatctaaaaatatggctgaaaattttctcaagccatctcttaca
cttgagcctgcagagtacaaccccacaaagagcagttatcatcctgttcatgatgcttgc
tggggccctggccaaaagtgtgtgccactgaggataccatacatggctgttgctcgtact
tttgaatatattgaggaagaatctgcccgattgaaaattatagagaccctaagcaatctc
tttcgttctctgattgtcctatctccacaagacttgctcccctgtgtctacctctgtctc
aatcggttaggtccagcatatgaaggcctagaattaggcattggcaaaaccatcctcatg
aaagctttggcccaggccacaggtcggcaattggaccaaatcaaggcagaggcagcagag
aagggagatctaggtatagttgctgaaaacagtcgcaccacacaaggaacagtgtttgct
ccacccaaacttggtgctgctgctgtttttggcaaactgcaagcaattggtcacatggca
ggaagttcttctatgaacaagaaaattgacattattaaatctttgtttgttgcgtgtcgt
cattcagaggctcgttatgtggctcggtcactagaaggaaagttacggattgggttagca
gagcagtctgtcctctcagctcttgcccaggcagtatcactcactcccccaggacaaaaa
tttcccccagatgttttggatgctgcaaagggcaaatctgcagatgcacgcaaagcatgg
ctggatgaaagggccttgattgttaagcaggccttctgcgaactaccaaattataacata
atagtacctgtccttttggaacatggtgtggagagcttgccacagtactgcaagatcacg
ccaggtattcccctgaagcccatgctggctcatccaaccaaaggaattggggaggtatta
aaacgctttgaagaagcagccttcacttgtgaatacaaatatgatggggagcgggcacag
atccacattctagagaatggagaagtacatatttatagccgaaaccaagagaacaacaca
acaaagtaccctgatattgtcactcgtgttcccaaggtgaaaaacagcactgtggaatca
tgcattttggatgcagaggcagtggcctgggaccctgtttcaaaacagatccttccattc
caagtattgaccacccgcaagcgcaaggatgtggatgctgcagaaatcagagttcaagtt
tgtatatatgcatttgacatgctctaccttaatggaatatctttagtccagaagcctctg
tctcagcgccggaccttactgcataattctttcactgaagttgaaggccaattccttttt
gccacttccatggatactagtaatgttgatgagatagcagaattcttggaacgctctatc
aaagactcatgtgaaggcttaatggtaaaaacactggaagtggatgccacatatgaaatt
gcaaagaggtcacacaactggctgaagcttaaaaaagattatctggaaggtgttggggac
acccttgacctggcagtgattggagcctatttgggcaagggcaaacgggcaggcacatat
ggaggttttcttctagcatgttacgatgaggaaagtgaagagttccagagcatttgcaag
attggcactggattctcagatgaggacttagagaaactccataactcactcaaggattac
gtgattccacagccacgaccatactatcgttggggtggaacagctgaacctgatcactgg
ttggaagcccagcatgtttgggaagtgaagtgtgctgatttatccatttctcccatccat
agagcagcatcaggtttggtggatgaagaaaagggcatctccttacgttttcccagattc
ctgcgcatccgagatgataagaaaccagaggaggccactagcagtgctcaggtggctgaa
ctttatcagcgccagcagcagatccaaaatcaactgccactggaaaaagatgatgacttc
tattaa

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