Panthera tigris altaica (Amur tiger): 102972099
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Entry
102972099 CDS
T02988
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptg
Panthera tigris altaica (Amur tiger)
Pathway
ptg03013
Nucleocytoplasmic transport
ptg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102972099 (UPF1)
03015 mRNA surveillance pathway
102972099 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptg03019
]
102972099 (UPF1)
Enzymes [BR:
ptg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102972099 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102972099 (UPF1)
Messenger RNA biogenesis [BR:
ptg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102972099 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102972099 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
Helicase_RecD
nSTAND3
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102972099
NCBI-ProteinID:
XP_015395833
LinkDB
All DBs
Position
Un
AA seq
1071 aa
AA seq
DB search
MFMAAKRWKKPKCPLKSKRVGGPEGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKD
LPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLG
ETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRC
FLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYE
DAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDL
VIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVT
HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQ
GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA
VDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGE
LSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPEC
MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHP
ALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLN
RTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV
DAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALPKQPLWN
HLLXXXXXXXXXXXPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVY
DRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
RGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQM
SQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgttcatggcagccaaaaggtggaaaaaacccaagtgcccactgaagagtaaacgggtc
ggtggaccagagggcattctgcagaacggggctgtggatgacaatgtggccaagaccagc
cagctgttggccgagttgaactttgaagaagatgaagaagatacctattacacgaaggat
ctccctgtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgt
aataccagcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgta
aatcacctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggg
gagacagttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatc
cctgccaaagcggactccgtagtggtgctcctgtgcaggcagccctgtgccagtcagagc
agcctcaaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgc
ttcctctcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatc
actgctcagcagatcaacaagctggaggagctctggaaggaaaatccttctgccaccctg
gaggatctggagaagcccggtgtggatgaggagccgcagcacgtcctcttgcggtacgag
gacgcctaccagtaccagaacatattcggccctctggtcaagctggaggccgactacgat
aagaaactgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggcctt
aacaagaagagaatcgcctacttcactttgcccaagactgactctggtaatgaggattta
gtcataatttggttaagagacatgcggctcatgcagggagatgagatatgcctgaggtac
aaaggggatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataat
tatggcgatgagatcgccattgagcttcggagcagtgtgggcgcccctgtggaggtgact
cacaacttccaggtggatttcgtgtggaagtcaacctcatttgataggatgcagagtgct
ttgaaaacgtttgctgtggatgagacctccgtgtcaggctacatctaccacaaactgctc
ggccacgaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacag
gggctcccagacctcaaccactcccaggtttacgctgtgaagactgtgctgcagagacca
ctgagcctgattcaggggccaccgggcacggggaagaccgtgacctctgccaccatcgtc
taccacctggctcggcagggcaacgggcctgtgctcgtctgtgctccgagtaacatagct
gtggatcagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgcg
aagagccgtgaggccattgattccccggtgtcattcctggccctgcacaaccagatcagg
aacatggatagcatgccggagctacagaagctgcagcagctgaaggacgagactggggag
ctgtcctctgccgacgagaagcggtaccgggccctgaagcgcaccgccgagcgggagctg
ctcatgaatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgcc
aagatgcagttccgctccatcttaattgacgagagcacccaggccaccgaaccagagtgc
atggtccctgtggttcttggcgccaagcagctcatcctcgtgggcgaccactgccagctg
ggccctgtggtgatgtgcaagaaggccgccaaggctggactgtcccagtcgctcttcgag
cgcctggtagtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcaccca
gcgctcagtgccttcccgtccaacatcttctacgagggctctcttcagaacggcgtcacc
gcagcggatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatg
ttcttctacgtgacccagggccaagaggagatcgccagctcaggcacctcctaccttaac
aggacggaagctgcaaatgtggagaagatcaccacgaagctgctaaaggcgggtgccaag
cctgaccagatcggcatcatcacaccctatgagggccagcgctcctacctggtgcagtac
atgcagttcagcggctccttgcacaccaagctctaccaggaggtggagattgccagtgtg
gacgcgttccagggacgagagaaggacttcatcatcctttcctgtgtgcgagccaacgag
caccaaggcattgggtttttaaacgaccccaggcggcttaatgtggctctgaccagagca
aggtatggggtcattatcgtgggcaacccaaaggccttgcccaagcagccactctggaac
cacctgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccctgaacaaccttcgg
gagagcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcc
cgcttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctat
gatcggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggc
atgatcagtgcgggacccagccacgtggctgccatgaacattcccatccctttcaacctg
gtcatgccacccatgccaccaccagggtattttggacaagccaacgggccagccgcaggc
cggggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctc
cctggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcacag
cccttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatg
agccagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagttt
aagtcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcgtac
cagcacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
