Pelotomaculum thermopropionicum: PTH_1244
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Entry
PTH_1244 CDS
T00519
Name
(GenBank) predicted eukaryotic-type DNA primase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pth
Pelotomaculum thermopropionicum
Pathway
pth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PTH_1244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pth03400
]
PTH_1244
Enzymes [BR:
pth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PTH_1244
DNA repair and recombination proteins [BR:
pth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PTH_1244
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAF59425
UniProt:
A5D2W2
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All DBs
Position
1283683..1284654
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AA seq
323 aa
AA seq
DB search
MERQSLKDLDVTVDGRRLRLTNLNKLMWPEGLTKADLIKYYSAVAPYILLYLANRPLVMK
RYPDGLAGGAFYQKECPAYAPLWIKRQPVRHGGKVVNYIVCNDSATLIWLANQACIEMHA
WPARAENLESPDLAVMDLDPAEGATFTDVLDIALMVRTVLDEFGLKSFPKTSGAGGIHLF
IPVRPCYTWQQVAAAMKCVAGIVEGACPGRATTERKVEKRKGKVYLDYLQNAKGKTMAFQ
YSLRPLPGAPVSAPLLWQEVEKREVRPWQFNIDTIFQRLADRGDLYNGMQGLDQSLDELI
KISTKKIFPAGRKISPQPRKEGD
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacagtccttaaaagatcttgacgttacggtggacggccgcaggctgaggctg
accaacctgaacaagctgatgtggccggaaggcctgaccaaggccgacctgatcaagtat
tattcggccgtggcgccgtacattctgctttatctggccaaccggcctcttgttatgaag
cgctatccggacggcctggcaggcggggcgttctaccagaaggaatgtcctgcctatgct
cctttgtggattaaaaggcagccggtgaggcatggcggaaaagttgtaaattacatagtc
tgcaacgacagcgcaaccctgatctggctggccaaccaggcctgcattgaaatgcacgcc
tggcctgcccgggcggaaaatctggagagcccggacctggccgtaatggatttggacccg
gccgagggtgccacctttaccgacgtgctggatatagcccttatggtcagaacggtgctg
gatgaatttggcctgaaaagctttcccaagacttccggggccggcggaatacacctgttt
atccccgtcaggccttgttatacctggcagcaggttgccgcggcgatgaagtgcgttgcc
ggaatagtggaaggtgcctgcccgggcagggcaacaacagaaagaaaagtcgaaaaaaga
aaaggcaaggtgtaccttgattacctgcagaacgcaaagggaaagacaatggccttccaa
tacagcctgcggcccttgcccggtgctcccgtgtccgccccgctgctctggcaggaggtt
gaaaaaagggaggtcaggccttggcagtttaacattgataccattttccagcgccttgcc
gaccggggcgacctttataacggcatgcaagggctggaccagtcgctggatgaacttata
aaaatatccacaaagaaaattttcccagccggaaggaagatttcccctcaaccccgaaaa
gaaggggattaa
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