Paenibacillus thiaminolyticus: NDS46_24980
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Entry
NDS46_24980 CDS
T08812
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NDS46_24980 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pthi03400
]
NDS46_24980 (ligD)
Enzymes [BR:
pthi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NDS46_24980 (ligD)
DNA repair and recombination proteins [BR:
pthi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NDS46_24980 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Herpes_UL6
Motif
Other DBs
NCBI-ProteinID:
WCF07527
LinkDB
All DBs
Position
5486745..5487665
Genome browser
AA seq
306 aa
AA seq
DB search
MASKEPPASLMVEGHEIQITNPNKLLWPEAGITKTDYIREMIRLSPYLLAACRDRFLTTI
RYPHGVPGEFFYQKNVPPGAPSFVETAMSGDIRYIVLQNVPTLLWLANLACIEFHPSLHR
IGDPLPAEWIIDLDPSVREEERIMEAAWIVGEAMERIGIRTIPKTSGATGVQLIVPIKRG
PTFMQLRELGEMLAIYLCELHPQLFTIERLKKNRGTRIYIDYMQHDISRTIAAPYTPRAT
PYASVSMPLTWNEVKRNPKPRDYHLLNAADRLAQVGDLIRDAEPQAIEPILEAFSRQIQA
SRSRRG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaagaaccgcccgcgtccttaatggtggaagggcatgaaatccaaatcacg
aatccgaacaagctgttgtggccggaggcgggcataacgaagacagactatatccgggaa
atgatccggctgagtccatatttgctggcagcgtgccgcgaccgcttcctgacgacgatc
cggtatcctcacggcgttccaggggagtttttttaccagaaaaacgtgccgcccggggcc
ccctccttcgtcgagacagcgatgtccggggacatccgctatatcgtgctgcaaaatgtg
cctacactgctctggctggccaatctagcctgcatcgagttccatccttcactgcaccgc
atcggcgacccgctcccggccgaatggattatcgacctggatccgtctgttcgggaggag
gagcggattatggaggccgcctggatcgtaggcgaggcgatggaacggatcggcatccgg
acgattccgaagacgtccggcgccaccggcgtgcagcttatcgtgccgatcaagcgcggc
ccgaccttcatgcagctccgcgagctgggcgagatgctcgccatctacctgtgtgagctt
cacccgcagctgttcacgatcgagcggctgaagaagaaccggggcacccgcatttacatc
gattacatgcagcatgatatctcccggactatcgcagcgccatacacgccgcgggcgacg
ccgtatgcttcggtgtcgatgccgctcacctggaacgaagtgaagcgcaatccgaagccg
cgcgattaccatctgctcaatgccgccgatcggctcgcccaggtcggcgatctgatccgc
gatgccgagccgcaggcaatcgagccgattttggaggccttctccagacagattcaagca
agccgatctcgaagaggctaa
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