Phaeodactylum tricornutum: PHATRDRAFT_12990
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Entry
PHATRDRAFT_12990 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_12990
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHATRDRAFT_12990
Spliceosome [BR:
pti03041
]
Complex C
Other components
Complex C specific factors
PHATRDRAFT_12990
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
CMS1
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
7201720
NCBI-ProteinID:
XP_002181079
JGI:
12990
UniProt:
B7G1R2
LinkDB
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Position
10:complement(797725..799227)
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AA seq
500 aa
AA seq
DB search
LQAASERAQGVVYEKPMPSSWRVPRYILEQGEEAWQAIRDEWHMEVQGNDIPPPLKRFVD
MKFPQPILASLKQKGIARPTPIQMQGLPVALAGRDMVGIAFTGSGKTLTFGLPLVMAALE
EELRMPIAPGEGPVGIILAPSRELARQTYELVSELATALTTPPAGDSREKNRYPQLRTQL
LIGGESVRDQVQTVQQQGIHCVVATPGRLRDLLKRKALNLMICRYICLDEADRMLDLGFD
EEVGTIMNHFPHQRQTLLFSATFPKKFQDFARQTLVQPIVVNVGRAGAANLDVIQEVEYV
KQEAKIVYLLHCLQKTAPPVIIFCERKGDVDDIHEYLLLKGVQAVSIHGGKDQEERNEAI
TLFKSGQKDVLIATDVAAKGLDFAAIQHVINFDMPTEIENYVHRIGRTGRCGKTGVATTF
INKSCEETTLLDLKGLLREARQRIPPVLLMLDDPREQNGGAGCSFCGGLGHTIVDCPKID
KDARRVAGGHKDALAGGGDW
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagccgcgtcggaacgtgcacaaggggtcgtttacgaaaagccaatgccctcgtct
tggagagtgccacggtatattcttgaacaaggagaagaggcttggcaagctattcgagat
gaatggcacatggaagtgcaaggcaacgatattccacccccgctgaagcgcttcgttgac
atgaaatttccccaaccaattttggcgtctttgaaacagaaaggaattgcacgtcccact
ccgatccaaatgcagggtctacctgtcgcactggcgggtcgggatatggtcggcattgcc
ttcaccggctctggtaagactttaactttcggtttgcctctcgtaatggcggccctggaa
gaggagttacgtatgccgattgctccgggagaaggcccggtcggtattatactcgcgccc
tcccgtgagttggctcgacaaacgtacgaactcgtctcggaattggccacggccttgact
accccacccgcgggcgacagtcgagaaaagaatcggtatccacagctacgcacacaatta
ttaattggtggcgaatctgtacgtgatcaagtgcaaacggttcaacaacaaggaattcat
tgtgtggtagccacaccgggacgactacgtgatttgctcaaacgcaaggctctcaatctt
atgatatgtcggtatatatgtcttgacgaagccgatcggatgctcgatttaggctttgac
gaagaagtcggaacgataatgaatcattttccgcaccaacggcagaccttgttgttttcc
gcgacctttccaaaaaagtttcaagactttgcccgtcaaactctagttcaaccgattgtg
gtaaatgttggacgagcaggagcggccaatctcgacgtgattcaagaagtcgagtacgtc
aagcaagaagcaaaaattgtatatttgttgcactgcttgcaaaagacggcaccgccggtg
attatattttgcgaacgcaagggtgatgtagacgatatccacgaatacttgctgctcaaa
ggcgtacaggctgtaagtattcacggtggcaaggaccaagaagagcgcaacgaagccatt
acgttgtttaagagtggccagaaggatgtcttgatcgcaacggacgtggctgccaaaggt
ctggacttcgccgccattcagcacgtaattaatttcgacatgccgaccgagattgaaaac
tacgttcatcggattggtcgaactgggcgatgtggcaaaactggtgtggccaccactttc
atcaataagagttgtgaagagacaacccttttggatctcaagggtctactaagggaagcc
cgccaacgtattcctccggttctcctgatgttggacgatcctcgtgagcaaaacggtggc
gccggctgttccttttgcggcggtctcggacatactattgtggattgtcccaagattgac
aaagacgctcgtcgggtggcgggcggtcataaagatgcgctggctgggggtggagattgg
taa
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