Phaeodactylum tricornutum: PHATRDRAFT_21682
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Entry
PHATRDRAFT_21682 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pti03016
]
PHATRDRAFT_21682
Enzymes [BR:
pti01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
PHATRDRAFT_21682
Transfer RNA biogenesis [BR:
pti03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
PHATRDRAFT_21682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Wyosine_form
Radical_SAM
Hydrolase
HTH_ParB
CCDC90-like
Motif
Other DBs
NCBI-GeneID:
7202594
NCBI-ProteinID:
XP_002181799
JGI:
21682
UniProt:
B7G3J1
LinkDB
All DBs
Position
13:complement(759950..761493)
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AA seq
416 aa
AA seq
DB search
MDLEDMGDAMLATQAATVKSKEPREMVTPSQAAALKKEGYKLIGTHSAVKLCRWTKHQLR
GRGGCYKHTFYGITSYQCMEATPSLACANKCVFCWRHHKNPVGKEWRWKTDDPYFIVDQA
VNTHVQMIKEAKGIPGVRMDRWQEAHTVRHCALSLVGEPIMYPRIGELLGDLHRRKISTF
LVTNGQHPHAIGTLRPITQLYVSVDAPTQESLIEIDRPLFNDAWDRLKQSLVSLKDKGQR
TVARLTVVKGWNSDEIEGYAKLIVLGQVSLVEVKGVTFCGKSDASNLNMTNSPWHHEVVE
LTRTLKDEIQKIRDKGGDDVPPEYGLACEHKHSCSVLLARVDQFSKVDPATGQRKWQTWI
DYDRFQELAAMYEEDPTFTFGVEDYVADTPAWALFGAEEEGFDPTDKRHRRPKKHP
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaagacatgggcgatgccatgctggcgacacaagctgccaccgtcaaatct
aaggagccacgcgaaatggtcacgccgagccaagcagcagctcttaaaaaagaaggatac
aagttgatcggaacccacagtgccgtcaaactctgtcgctggacgaaacaccagttgcga
ggacgtggcggatgttacaagcacaccttttacggcatcaccagctatcaatgcatggaa
gcaacaccaagcttggcctgcgccaacaagtgcgtcttttgctggcgccatcacaaaaac
ccagtgggcaaagagtggcgatggaagacggacgatccgtatttcattgtcgatcaggct
gtcaacacacacgtacaaatgatcaaggaagccaaaggtattccgggtgtgcgtatggat
cgttggcaggaagctcataccgttcgtcattgtgcacttagtttagttggtgagcctatt
atgtacccgcgcatcggtgaactcttgggagatctccaccgacgcaagatttcgaccttt
ctggtgactaacggtcagcacccgcacgccatcgggacacttcgtcccattacacagctt
tacgttagtgtggacgcacctacgcaagaaagtttaatagaaattgatcgcccattgttc
aatgacgcttgggatcgtttgaaacaatcgctcgtttctctaaaggacaagggtcaacga
acggtggctcgtctgacagttgtcaagggctggaactcggatgaaatcgaaggttacgct
aagctgattgtcctaggacaagtcagcttggtggaggtaaagggggtgacgttctgcggc
aaatccgacgcttccaatctcaacatgaccaattccccgtggcaccatgaggtagttgaa
ttgactagaacgctgaaagacgaaattcagaagattcgcgacaagggtggtgacgacgta
cctcctgaatacggattggcatgtgagcacaaacattcgtgcagcgttctactggcgcga
gtagatcagttctctaaggtggaccccgccactgggcagcgcaagtggcaaacttggatt
gattacgaccgtttccaagagctggcggcaatgtacgaagaagatcctacgtttacgttt
ggagtcgaagattacgtggcggatacgcccgcatgggctctttttggcgctgaagaggaa
ggctttgatccaaccgacaaacgtcaccggcgtccgaagaaacatccc
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