KEGG   Phaeodactylum tricornutum: PHATR_51005
Entry
PHATR_51005       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03030  DNA replication
pti03410  Base excision repair
pti03420  Nucleotide excision repair
pti03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PHATR_51005
   03410 Base excision repair
    PHATR_51005
   03420 Nucleotide excision repair
    PHATR_51005
   03430 Mismatch repair
    PHATR_51005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pti03032]
    PHATR_51005
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATR_51005
Enzymes [BR:pti01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PHATR_51005
    6.5.1.6  DNA ligase (ATP or NAD+)
     PHATR_51005
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PHATR_51005
DNA replication proteins [BR:pti03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PHATR_51005
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PHATR_51005
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PHATR_51005
   NER (nucleotide excision repair)
    Other NER factors
     PHATR_51005
   MMR (mismatch excision repair)
    Other MMR factors
     PHATR_51005
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 7204673
NCBI-ProteinID: XP_002185904
JGI: 51005
UniProt: B5Y3V2
LinkDB
Position
11:complement(534010..536263)
AA seq 651 aa
MPYSVLCQAFTDIEAVTSRLLIQQIFTTLLRQIAVQNPVDLYPVLYLASNDVAPAYECVE
LGVGDSILVRAIGEATGTNPAMVKKRYEEIGDLGDVAKSFKSKQRTLGGFFQKSVAPKKP
LTAAQVLHVFREIAQTKGNQSQKWKVENIKKLIVQATEATETKYIVRGLQGKLRIGLAQS
TVLIGLAHALALTPPITLCPHQPTLAELEDYPAEARQYLDDTLPSEKRMEAAVAIVKKAY
SEVPSYDAIVNGAAKVPLHQLHRACTLTPGIPVAPMLAKPTKSIQEVLKRLSGLRFTCEY
KYDGERAQVHLLPDGTTRVFSRNLLDTSEKYPEVPLFVKEACRNVESFVLDAEVVAYNNK
TGQLVPFQILSTRKKTEESAETAKVQVIVQAFDLMYLNGKSLLNQTLAARRSLLMEHFEA
VPGKFQFAKSLDHKEDGDTTVLEEFLDSAVKGQCEGLMVKTLEVNAIYEPSRRSLNWLKL
KKDYLDGLGDSVDLVPLGAYHGRGKRTGFYGAYLLACYDSETEEFQSVCKIGTGFSEEDL
KSLAENLNQHVIPTKSQQYSVSDVLECDVWFDAVQVWEIKAADLSKSSTHRGAEGKTGEE
GRGIGLRFPRFERIRDDKRPEEATTSDQILEMYYQQDAIAGNDDDVEDDGI
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgccctacagtgtcctctgtcaagcctttaccgacattgaagccgtcaccagtcgactc
ctcatccaacaaatcttcaccacactcttgcgtcaaatcgccgtacagaatcccgtcgat
ctctatcccgttctctacttggcctccaacgacgtcgcacccgcctacgaatgcgtcgaa
ctcggcgtgggcgattccattctcgtacgcgccatcggtgaagccaccggaaccaacccc
gctatggtcaagaaacgctacgaagagattggggacctcggggacgtggccaagtccttc
aaaagcaagcagcggaccctcgggggattctttcaaaaatccgtcgctcccaaaaagccc
ctcaccgcggcacaagtactccacgtctttcgggaaatcgcacaaaccaagggcaaccag
tcgcaaaaatggaaggtcgaaaacatcaagaaactcatcgtacaagccacggaagccacc
gaaaccaaatacattgtccggggcttgcaaggcaaacttcgcatcggattggcgcagtcc
accgtactcattggactcgcccacgcactcgccctgaccccgcccatcacgctatgcccc
caccaacccactcttgcggaactcgaagactatcctgccgaagcccgacagtacctggac
gatacgcttccttcggaaaagcgcatggaagccgccgtagcgattgtcaaaaaggcctac
tccgaagtcccttcctacgacgccattgttaacggggcagccaaggttcccttacaccag
ctgcaccgtgcttgcactctgacacccgggattcctgtcgccccgatgctggccaaaccc
accaagtccatacaggaagtcttgaagcgtttgagcggactccggtttacctgcgaatac
aagtacgatggggaaagggctcaggtgcacctgctcccggacggtaccacccgtgtgttt
tcgcggaacttgctggacacgtcggaaaagtatcccgaagtgccgctgttcgtcaaggag
gcttgccggaacgtggaatcgttcgtattggatgccgaagtggttgcctacaacaataaa
accggacagctcgtgccctttcaaattctgtcgacccgcaaaaagacggaagagtcagcc
gagacggccaaggtacaagttatcgtgcaggcctttgatctcatgtacctcaacggcaag
tctctgctcaatcagaccctcgccgcgcgtcgatccctactcatggagcactttgaagcc
gtgccgggaaaattccagttcgccaagtcgctggaccacaaagaagatggggatacaact
gtactggaagaatttttggacagtgccgtcaagggacagtgcgaaggtctcatggtcaaa
actttggaagtaaacgccatttacgaaccgtcccgaagatcgctcaattggcttaaactc
aagaaagattacctcgatgggctgggggactcggtcgacctggtcccgctaggtgcctac
cacggcaggggcaagcgtaccggcttttatggtgcctacctgctcgcctgctacgattcg
gaaacggaagaattccagagcgtgtgcaagattggcacgggcttttcggaagaggatctc
aagtccctggccgaaaatttgaaccagcacgtgattccgaccaagagtcaacagtacagt
gtatccgatgttttggagtgcgacgtttggttcgatgccgtgcaagtgtgggagatcaag
gccgccgatttgtccaaatcgtcgacgcatcgcggtgctgaggggaaaaccggggaggaa
ggtcgcggtattggcttgcgctttccacgttttgaacgtattcgggacgacaaacgaccc
gaagaggcgacgacgagcgatcagattctggaaatgtattatcagcaggatgcaattgca
ggcaatgacgatgatgtcgaggatgatggaatataa

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