Paenibacillus tianjinensis: JRJ22_04255
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Entry
JRJ22_04255 CDS
T07842
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JRJ22_04255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptj03400
]
JRJ22_04255 (ligD)
Enzymes [BR:
ptj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JRJ22_04255 (ligD)
DNA repair and recombination proteins [BR:
ptj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JRJ22_04255 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
QSF45854
LinkDB
All DBs
Position
complement(1000942..1001826)
Genome browser
AA seq
294 aa
AA seq
DB search
MPAVLKGSITVDGQEITVTNPDKPLWPEVGITKRIYLQKLAALSPYLLRYCKDRLLTVIR
YPHGVPGMSFYQKNAPQPLPGFVKTALHEGIEYIVLQGLPELIWLGNLAALEFHPSLHYA
GSSLPCEWMIDLDPSLEVEPRIMEAAAMVGDVLKSLGLASVPKTSGATGVQIIIPVNPGI
SFDELRKIGHFVGRYVTEKRPDLFTLERLKKHRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVARNVSPADYHLLNIEERLSRMGDLIAKVPPQPVSDIVSKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgtgctcaaaggctccatcaccgtagacggacaagagatcacagtaacgaac
ccggacaagcccctctggccggaggttggaatcaccaagcggatttacctgcaaaagctg
gctgcactctccccttacctgctgcgttactgcaaagaccggctgttaacggttatccgc
tatccgcacggagtgccggggatgtccttctatcagaagaatgccccccagccgctgccc
ggttttgtgaagacagccctgcatgaaggtattgagtatatcgtcctgcagggccttccc
gaactgatctggctcggcaatttggccgcgctggaatttcatccttcgctgcactacgcg
gggagcagcctgccctgtgagtggatgatcgatctggatccttctcttgaagtggagccg
cgcattatggaggcggccgctatggtcggggatgtgctgaaatcactggggctggcttcg
gttcccaaaacctccggggcaacgggagtgcagattattatcccggtgaatccgggaatt
tcctttgatgagctgcgtaaaatcggccatttcgtcgggcgttatgtcaccgagaagagg
ccggacctgttcacattagagcggctcaagaaacaccgcggcgacaagatttatttcgat
tatctgcagcattacggcggcaaaaccttagccgctccctatacaccgcgcgcacgcccg
ctggctacggtgtccaccccgctcctgtgggaggaggtcgcccgcaatgtctcacctgct
gattatcatctgctgaatattgaggagcggctgagccgcatgggagatcttatcgccaag
gtgccgccgcagccggtcagtgatattgtctcgaagctgccatga
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