Pseudomonas tructae: EXN22_18850
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Entry
EXN22_18850 CDS
T07857
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptk
Pseudomonas tructae
Pathway
ptk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EXN22_18850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptk03400
]
EXN22_18850
Enzymes [BR:
ptk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXN22_18850
DNA repair and recombination proteins [BR:
ptk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EXN22_18850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
QBF27646
UniProt:
A0A411MLD9
LinkDB
All DBs
Position
4130883..4134332
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPHLPATAGKQTWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRISSLYRLPELDHGILVVPITTALHRLAPT
RFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGVEQAAEHFWSDVRN
RYEERRIDPARPLLPPVELFLPVEDCFARLKSWPRVVASQDDVDSGVGRERFAAQPLPNL
AIEAKANQPLAALSGFLDQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDNWSAFVAG
KERLAITIAPLDEGLLLDDPAIALVAESPLFGQRVMQRRRRDKRSDANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSVDYATFSAGFP
FEETPDQQSAIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSPKEIAAAVADLAEGKIDIVIGTHKLLQDDV
KIKDLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAVDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKKV
DAGPNGGKIEFESETPVDPLVLIKLIQGQPKRYKFEGATQFKFMVPMERPEERFNNLEAL
FERLTPQSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcacctgccggccactgccggcaaacaaacctggggcaac
ctgccgggcgccgccctgagcctggccattgccgaagcggccagtgccgccaaacgcttt
accctgctgctgaccgccgacagccagagcgctgaccgcctcgagcaggaactgcgtttc
tttgcgcccgagctgccggtactgcccttccccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatctcccagcgcatttccagcctgtaccggctgccggag
ctcgaccacgggattctcgtggtgccgatcaccacggcgctgcaccgcctggcgccgaca
cgctttttgctcggcagcagcctggtcctggacattggccagaagctggatgtcgagcag
atgcgcacacgcctcgaggccagcggctaccgttgtgtcgacacggtctacgagcatggc
gaattcgccgtgcgcggcgccttgatcgatctgttcccgatgggcagcaagctgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggaaacccag
cgctcgatcgacaaggtcgattcggtgcggctgctgccggcccgcgagttcccgctgcaa
aaagaggcagtcacgcgtttcaaggcacgctttcgcgagcgcttcgatgtcgatttccgc
cgctgcccgatcttccaggacctgtccagcggcattactccggccggtatcgagtactac
ctgccgctgttcttcgaagacacctcgaccctgttcgactacttgccccaggacacccag
gtgttttccctgccgggcgtcgagcaagccgccgaacacttctggagcgatgtacgcaac
cgttacgaagagcgccgcatcgacccggcgcggccgttgctgccgcccgtcgagctgttc
ctgccggtggaagactgctttgcccggctcaaaagctggccacgggtggtcgcaagccaa
gatgacgtcgacagcggcgtcggccgcgaacgcttcgcggcccagcctctgcccaacctg
gccatcgaagccaaggccaaccagccactggcggcgctgtcgggcttcctcgaccagttc
cctggccgcgtgttgtttaccgccgaatcggcgggccgccgcgaagtcctgctggagctg
ctcgaacgcctgaagctgcgccccaaaaccgtcgacaactggagcgcgttcgttgcgggt
aaagagcgcctggcgatcaccattgcgccgctggacgaaggcctgctgctggatgacccg
gccattgccctggtcgccgagagcccgctgttcggccagcgggtcatgcagcgccgacgc
cgcgacaaacgcagcgacgccaacaacgatgcagtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggtgtcggccgctacttgggcctggcgacc
ctggaaatcgacaaccaggccgcagaattcctcaccctcgaatacgccgagggtgccaag
ctctatgtaccggtggccaacctgcacctgatcgcccgttacaccggtagcgacgatgcc
ctggcgccgctgcaccggctcggctccgaagcctggcaaaaagccaagcgcaaggccgcc
gagcaagtgcgcgatgtggccgccgagctgctcgacatctatgcccgccgcgccgcacgc
aaaggctatgcgtttgccgacccgtcggtggattacgccaccttcagcgccggcttcccc
ttcgaggaaaccccggaccagcaaagcgccatcgaagcggtgcgcgaagacatgctggcg
gccaagccgatggaccgcctggtgtgcggcgacgttggcttcggcaagaccgaagtggcc
atgcgcgccgccttcatcgccgtgcacggtggccgtcaggtcgccattctggtccccacc
accctgctcgcccagcaacactacaatagtttccgcgaccgctttgccgactggccggtg
accgttgaagtgatgagccgcttcaagtcacccaaggaaatcgccgccgcagtggcggac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaaactgttgcaggacgacgtc
aagatcaaggacctgggcctggtgatcatcgacgaagaacaccgtttcggcgtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtggacatcctcaccctgaccgccacgccg
atcccgcgcaccctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccgccggctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacggtc
aaagaggcactgctgcgtgagctactgcgcggcggccaggtgtactacctgcacaacgat
gtcaaaagcatcgagaaatgcgccgccgaccttgccgagctggtacccgaggcgcgcatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agtgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagctgcaccag
ttgcgcggccgggtcgggcgcagccaccaccaggcctatgcctacctgctcaccccgcca
cgccagcagatctccccggacgccgagaagcgcctggaagccatcgccaatacccaggac
ctgggcgcaggtttcgtcctggccaccaacgacctggaaatccgcggtgctggcgagctg
ctcggcgaaggccagagcggtcagatccaggcggtcggctttaccctgtacatggaaatg
ctcgaacgcgcggtcaaggccatccgcaagggcacccagcccaaccttgaccaaccgctc
ggtggcggcccggaaatcaacctgcgtttgccggcgctgattcccgaagattatctgccg
gatgtgcatgcgcgcctgatcctctacaagcgcatcgcctcggcggtggacgaagacggc
ctcaaggacctgcaggtcgagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctggtgcgcctgaccctgctcaagttgcaggcggaaaagctcgggatcaagaaagtc
gacgccgggcccaatggcggcaagatcgagttcgagtcagaaaccccggtcgatccgctg
gtgctgatcaaactgatccagggtcagcccaaacgctacaagttcgaaggcgcgacccag
ttcaagttcatggtgccgatggaacgcccggaagaacgcttcaacaaccttgaggcgctg
ttcgagcgcctgaccccacaatctgcgtga
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