Pseudomonas tructae: EXN22_25245
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Entry
EXN22_25245 CDS
T07857
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptk
Pseudomonas tructae
Pathway
ptk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EXN22_25245 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptk03021
]
EXN22_25245 (rpoD)
Transcription machinery [BR:
ptk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EXN22_25245 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QBF28828
UniProt:
A0A411MPY0
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All DBs
Position
5482916..5484763
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVEHILSEYDRVTSEGGRLSDVLSGYIDPDDGIAPPAEV
PPPVDPKAPAKAEADDDEEEKEGDDEEEETESGPDPEVARQRFGAVQDQLNATLKVLKKN
GRSHKDSLKAMLDLAELFMPIKLVPKQFEALVERVRGALDRLRQQERAIMQLCVRDARMP
RADFLRLFPSNEIDQTWASDLAKRSTKWAAALGEKSDAIVACQQKLIDLESETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgccagaggatatttcagatccg
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttttgttggccgaagccgacaccgacgaagccgcagctgaa
gaagctgccgcggcgttggcggctgtggaaaccgatattggtcgcacgactgacccggta
cgcatgtacatgcgtgaaatgggtaccgtcgagcttctgacccgcgaaggcgagatcgaa
atcgccaagcggatcgaagaaggtattcgtgaagtcatgggtgctatcgcccacttcccg
ggtactgtcgagcacatcctctccgaatacgaccgcgtcaccagcgaaggtggccgcctg
tccgacgtcctcagcggttatatcgacccggacgacggcattgcgccgcctgccgaagtg
ccgccgcccgtcgacccgaaagcaccggccaaggctgaggctgacgacgacgaggaagag
aaggaaggcgacgacgaagaggaagagaccgaaagcggtcccgatcctgaagtcgctcgt
cagcgtttcggcgccgttcaggatcaactgaacgcgaccctcaaggttctgaaaaagaac
ggccgcagccacaaggacagcctcaaggcgatgctcgatctggctgagctgttcatgccg
atcaagctggtacccaagcagttcgaagcgctggttgagcgcgttcgtggcgccctggat
cgcctgcgtcagcaagaacgcgccatcatgcaactgtgcgtccgtgacgcccgcatgccg
cgcgccgacttcctgcgcctgttcccgagcaacgaaatcgaccagacctgggccagcgac
ctggccaagcgcagcaccaaatgggctgccgccctgggtgagaaaagcgacgctatcgtg
gcatgccagcagaagctgatcgacctcgaaagcgaaaccggcctgaccatcgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaagccaaggctcgtcgtgccaagaaagaa
atggtcgaggccaacctgcgtctggttatctcgatcgccaagaaatacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcttgatgaaggcggtggacaag
ttcgagtaccgtcgtggttacaagttctcgacctatgccacctggtggattcgccaggcg
atcacccgttcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaaccg
accccggaagagctgggtgagcgcatggaaatgcctgaggacaagatccgcaaggtattg
aagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagactcgcac
ctgggcgatttcatcgaagactcgaccatgcagtcgccaatcgatgtggccacggtcgaa
agcctcaaggaagcgacccgtgacgtgctctccggtctgaccgcacgcgaagccaaagtg
ctgcgcatgcgtttcggtatcgatatgaacaccgatcacaccctcgaagaggtcggcaaa
cagttcgacgtgacccgtgagcggatccgtcagattgaagccaaggcgctgcgcaagctg
cgccatccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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