Paramecium tetraurelia: GSPATT00017751001
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Entry
GSPATT00017751001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSPATT00017751001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptm03400
]
GSPATT00017751001
Enzymes [BR:
ptm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GSPATT00017751001
DNA repair and recombination proteins [BR:
ptm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GSPATT00017751001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
LIG3_BRCT
RNA_ligase
DNA_ligase_IV
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
5036604
NCBI-ProteinID:
XP_001450819
Genoscope:
GSPATT00017751001
UniProt:
A0DK55
LinkDB
All DBs
Position
undetermined
AA seq
944 aa
AA seq
DB search
MQQENFIDEEIQDEEEERREQKEVHEFAKEIKEKVEETNKQNKEQQDQQKVNVNSTVGPI
RVKFDVLRCFFDRMSKVRGKKKSELLDVLTQFFFKPPRIPEHTYIIMRLIIPFQDRDRGV
YKLQEKNLAKLFRSALGLSDDDYHRMANYKQASMQPYGAPVGDFPMVVHNVIKDYCRKDS
IITISEVDSLLDNLVKAQDTKEQELVVVDLIKVCTADEILWIIRIILKDLKIGLKYEKLL
QLFHKDAPEYYNATSSLNEVCKEFNVLRIFHAIKPMLAAKKSPEEIRKLIEGKELLVETK
FDGERIQCHFTPEVIRFFTRNSNDYTYLYKDKLGDIVRQSVQAQCAILDGEIIVVNKETG
DNVRFGLNKTVALSKDVNDDAFGLCYKIFDILYLKTYQGQEVNTMSAPLSTRRSLLQRII
VPIPNQLEVVQAATIKSFEELIQQFDMAIERNQEGIIIKQMDSQYLPNERSTKWVKMKGD
YVENMTDNCDLLVIGGYFGTQSHRVETFDEFDRITHFLMGLAQKIDKNQPTNSVILPFVK
VGTGFTDNELSTIRNKLRNHWIKKQKPNYIPQNWNPGVNDRPDVYINNPAHSIIFEVKAA
EITKSNTFPTDYTLRFPRCYKTRMDKDWYEMMTTQDLSSMINDSQYTKNLKKKNDKEGND
KQTDDERKQPLKKGGAHSKQITIMTEFQGLDPRNITKESNLFVGCEFFIVNLEEDYNKQY
LESIVLAQGGTCIQNYIVESVTHVVASIIDFRVNSIIEKFPTTIIRPQWIIECIRRSQLV
NIAPRFILFAPLAIMNEVNKFYDRFGDSYFELIDDLALKDICDNMKINETVNQDDLLSLE
EELLYQLPKLWIFQHKSFYPYCLNHQISDVELETFKARIIARGGSFVNSIYDEKLDFIIL
FKNQTFIQNERLKQFFNEKPYIKTTTYTQMMQLIEEQHQMILPS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaggagaattttatagacgaagagatttaagacgaggaagaagaaagaagagaa
tagaaggaagtacatgagttcgcgaaggaaataaaggagaaagtagaagaaaccaacaaa
caaaacaaagaataataggattaataaaaagtgaatgtaaattcaacagtaggtccaatc
agagtaaaatttgatgtgttgagatgcttttttgataggatgagtaaagtgagaggaaag
aagaaaagtgagctcctggatgttttgacttaattcttttttaaacctcctagaatacct
gaacacacttacataataatgagactaataattccattctaagatagggatagaggtgta
tataaattataagaaaagaacctggctaaattatttagatctgccttaggattgtcagat
gatgattatcatagaatggccaattataaataagcaagtatgtaaccctacggggctcca
gttggtgatttccccatggttgtgcataatgtgattaaggattattgcagaaaggacagc
ataattacaatatcagaagtggactcattgctcgacaatttagttaaagcttaagacact
aaagaataggaattagtggtagttgatttaataaaagtgtgtacagctgatgagatactt
tggataatcagaattatattgaaggacttaaaaattggtttgaaatatgagaagcttttg
caattgtttcataaagatgctcctgaatattataatgcaacatcatcactaaatgaagta
tgtaaagaatttaatgtattaagaatatttcatgccatcaaaccaatgttagcggctaag
aaatcacctgaagaaataagaaaattaattgaaggcaaagaattattggttgaaaccaaa
tttgatggagaaagaatataatgtcatttcacccctgaagtcatcagattttttactaga
aattcaaatgattacacatatttatacaaggataaattaggagatattgttagataaagt
gtttaagcataatgtgcaattttagatggagaaatcatagttgtaaataaagaaactgga
gacaatgttagatttggtttaaataaaactgttgctctaagtaaagacgtaaatgatgat
gcttttggactttgctataagatttttgatatactttatctcaaaacatactaagggtaa
gaagttaacactatgagtgctcctttatctactcgaagaagcttattataaagaattata
gtacctattccaaactaattagaagtagtttaagctgcaactattaaatcttttgaagaa
cttatttaataatttgatatggctatcgaaagaaactaagaaggcatcataattaaatag
atggattcttaatatttacctaatgaaagatccactaaatgggttaagatgaaaggagat
tacgttgaaaatatgacagataattgcgatttattggttattggtggatattttggaaca
taatcacatagagtggagacttttgatgaatttgataggattacacattttttaatgggt
ttagcttaaaaaatagataagaatcaaccaactaatagtgtaatattaccatttgtaaaa
gttggaactggtttcactgataatgaattatccacaatcagaaataaattaagaaatcat
tggattaagaagtagaaacctaattacataccataaaattggaatcctggagttaatgat
agaccagatgtatatattaataatccagctcattcaattatatttgaagttaaagctgca
gaaatcacaaagtctaatacttttccaactgattacactcttagatttccacgatgttac
aagacaagaatggataaagactggtatgaaatgatgaccacgcaagatttatcaagtatg
atcaatgactcataatacactaagaatctcaaaaaaaagaacgataaagaaggcaatgat
aaataaacagacgatgagagaaaataacccttaaagaaaggtggagctcattctaaatag
attaccataatgactgaatttcaaggattagatccaagaaacatcacaaaagaatccaac
ctatttgtaggatgcgaattttttattgtgaatttagaagaagattataataaataatat
ttagaatctatagttctagcccaaggaggaacttgtatataaaattacattgtagaaagt
gtcactcatgtagtggcttcgattatagattttagagtgaattcaattattgagaagttc
cctactactatcatcagaccataatggataattgaatgcattagaagatcataattagtt
aatattgcacctagatttattttgtttgcccctctagccatcatgaatgaagtcaataaa
ttctatgataggtttggtgattcctatttcgaattgattgacgatttggctctcaaagat
atctgtgataatatgaaaattaatgaaactgtgaattaggatgatttattatctttagaa
gaggaattattatactagttaccaaaattatggatattttagcacaagtctttctatcct
tattgtttaaatcactaaatatctgatgtagaattggaaacttttaaagctcgaataata
gctagaggaggttcatttgtaaatagtatatacgatgagaaattagactttatcatttta
tttaagaatcagacttttatccaaaacgaaagactcaaacaatttttcaatgaaaaaccg
tacatcaaaacaactacctacactcagatgatgtaattaattgaagaataacattaaatg
atattgccttcctga
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