Psychroflexus torquis: P700755_002024
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Entry
P700755_002024 CDS
T02275
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptq
Psychroflexus torquis
Pathway
ptq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P700755_002024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptq03400
]
P700755_002024
Enzymes [BR:
ptq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P700755_002024
DNA repair and recombination proteins [BR:
ptq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P700755_002024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
AFU68817
UniProt:
K4IE12
LinkDB
All DBs
Position
2155953..2159318
Genome browser
AA seq
1121 aa
AA seq
DB search
MTKADIKKHFSKSPIIKELSETLLSGEKKQIFIKGLIGSAVSFVQSESFLKSERPFLLVF
NDKEEAAYHLNDLEQLVDEKNVLFYPGSYRRPYQIEETDNANILLRSEVLNRINSRKKPS
IIVTYPEAIFEKVVTKKELDRTVLKINLNDELSIDFVNEVLFEYNFKRVDFVTEPGEFSV
RGGIIDVFSFSNDEPYRIEFFGDEIDSIRAFDVETQLSTKQKKRIDIMPNVEKVQLDEVR
QTFLEYISHNTVVFIKNVDVLSQTIDNLFSKAEKAFSKLSTDIKHSEPNELFSKGELLKK
QLLEFTSVEFGTQAFLKPDQTFIYPTSPQPSFNKKFDLLIKDLNNKHHKGYENCILCTSE
QQAKRFKDIFEDQDDEVHYTTLLLSMHEGFIDETNKLVCYTDHQIFDRYHKFHLKNGYAK
KQAITLKELTSLEIGDYVTHIDHGIGKFGGLQKIDVEGKFQEAVKLFYGDRDILYLSIHS
LHKISKFNGKDGKAPQVYKLGSKAWKSLKNKTKARVKKVAFDLIKLYAKRKLEKGFQYGP
DSHLQHELEASFIYEDTPDQGIATQDVKSDMEKEQPMDRLVCGDVGFGKTEIAIRAAFKA
VDNGKQVAVLVPTTILAFQHHKTFTERLSEFPVTVDYLNRFRTTKERRSVLEGLEDGSVD
IVIGTHQLVSKAVKFKNLGLLIIDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQF
SLMAARDLSTIKTPPPNRYPIETHVIRFSEDQIRDAVSYEIERGGQVFFINNRIENINEV
AGLIQRLVPDAKIGIGHGQMEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFI
NSANNFGMSDLHQMRGRVGRSNKKAFCYLITPPLTMMTDDAKKRLSALEQFSDLGSGINI
AMKDLEIRGAGDLLGGEQSGFISDIGFDTYQKILNEAIQELKENEFKSVYDEENAEEDQV
FVKDAQIDTDFEILFSDNYINSIKERLNLYTKLNSIQDEDGLANFEKELIDRFGDLPKEA
RDLINSVRLKWIAANIGLEKLILKKGKMIGYFLSNQDSEFYNSSRFRSVLHYVHSHPRQC
QMKEKQTRNGLRLLLTFEHVKTVDKAIGLLQPFEQKEVAKA
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagctgatattaaaaaacacttttccaaaagtcccataatcaaagagttaagc
gaaactcttttgtccggagaaaagaaacagatttttatcaaaggtttaataggttcggcg
gtctcatttgtgcaatccgaaagttttttgaagtctgaacgtccttttttgttggtcttt
aacgataaagaagaagccgcataccatctcaacgacctcgagcaactcgtcgatgaaaaa
aacgttcttttttaccctggaagttatagacggccttaccaaattgaggaaaccgataat
gcaaatatcctgctgaggtctgaagttcttaaccgaatcaattctagaaagaaaccatcc
attatagtaacttatccagaggctatctttgaaaaagtagtcaccaaaaaagaactggac
cgcacggttttgaaaataaatctcaatgatgaactatcgattgactttgttaatgaagtt
ctatttgaatacaattttaaacgcgtcgattttgtaacggaacctggagaattttctgtg
agaggaggcattatagatgtgttttcattcagtaatgatgaaccttatagaatagagttt
tttggggatgaaatcgatagcatacgtgcatttgatgtggaaacccaattatccaccaag
caaaagaagagaatcgacatcatgcccaatgttgagaaagtgcagctagatgaagtccgc
caaaccttcttggaatatatcagtcataacacggtggtctttattaaaaatgtagacgtc
ctttcgcaaactattgataatttgttttcaaaagctgaaaaggctttttctaaactttct
acagatataaaacacagtgagcctaatgaattattttctaagggcgagctgctcaaaaaa
cagttacttgagtttacaagtgttgaatttgggacacaagcttttttaaaacccgatcaa
acctttatctaccctacgagccctcaaccttctttcaataaaaagtttgatctgcttata
aaggatttgaataacaagcatcataaaggctacgagaattgtattctttgtacaagcgaa
caacaggccaaacgctttaaagatatttttgaagaccaagacgatgaggtccactataca
accttgctgctttccatgcacgaaggatttatagatgaaaccaataaattggtatgctac
acagaccaccaaatcttcgaccggtaccataaatttcatttaaaaaatggctatgccaag
aagcaggccattaccttaaaagaattaaccagtttagaaattggggattatgtgactcat
atagaccatggaattggaaaatttggtgggttacagaaaatagacgtcgaggggaaattc
caagaagctgtaaagttgttttatggagaccgagatattctctatttaagcattcattct
ttacacaaaatttcaaaatttaacgggaaggatggtaaggcccctcaagtctacaaatta
ggaagtaaagcctggaaaagtcttaagaataagaccaaagctagagtaaagaaagtagcc
tttgaccttataaaattatatgccaaacgaaagttagaaaagggatttcaatatggacca
gattctcatttacaacatgaactggaagcctcttttatctatgaagatacgccagaccaa
ggcattgctactcaggatgtaaagagcgacatggaaaaagaacaacccatggatcgccta
gtctgtggggatgtaggttttgggaaaacagaaatcgctatccgtgcagcttttaaggct
gtagataatggtaagcaagttgctgttttggtccccactacaattttagcttttcagcat
cataaaacatttactgagcgattgtcagaatttcctgtcacggtagattacctcaaccgc
tttagaacgactaaagagcgtagatctgttttggaaggcctggaagacggtagtgtggac
attgtaataggtactcaccaactcgtaagtaaagctgtaaagttcaaaaatttgggactt
ctcatcattgatgaggagcaaaaatttggggtggccgtaaaagataaattgaaaactatt
aaggccaatgtagatactcttacccttacagctacgcctataccaagaacccttcagttt
agcctgatggctgccagagatttatcgaccatcaaaacccctcctccaaaccgctatcct
atagaaacccatgtcattcgattttctgaagaccagatccgagatgccgtgtcctatgaa
attgaaaggggtgggcaagtcttttttatcaataatcgtattgaaaacataaatgaagtt
gctggacttatccaacggttggttcctgatgctaaaattggcattggacatggacaaatg
gaaggaaagaaactagaaaacttgatgttgcagttcatgaataacgagtttgatgtgctt
gtctccactacaattatagaaagcggtctagacgttaccaacgccaatactatttttatt
aatagtgccaacaatttcggcatgtcagatttacaccaaatgcgtgggcgtgtgggaaga
agtaataaaaaagcgttttgttaccttatcactccacccctaacgatgatgaccgatgat
gctaaaaagcgactttcagccttagaacagttttctgatttggggagcggcatcaatatc
gctatgaaagatttagaaatccgtggagcaggagatttgctaggaggtgagcaaagtggg
tttatttcggatattggttttgatacgtatcagaaaatattgaacgaggccattcaagaa
ttaaaagaaaacgagttcaaatctgtatacgatgaagaaaatgcagaagaggatcaggtg
tttgtgaaggacgctcaaatcgatactgactttgaaattctattctcagataactatatc
aatagcataaaagaacgcttgaatttatacaccaaattaaattctattcaagatgaagat
gggcttgccaatttcgaaaaggaattgatagatcggtttggagatttgccaaaagaagct
cgggatctaatcaacagtgtaagattaaaatggattgcagccaatattggacttgaaaaa
ttaattttgaaaaaaggtaaaatgataggttatttcctatctaatcaagattcagaattt
tataattccagtcgcttcagaagtgtccttcactatgtacactcgcatccacgccaatgc
cagatgaaggaaaagcaaactagaaatggcttgcgtctactgcttacgtttgaacacgtt
aaaactgtcgataaagctataggcttgcttcaaccctttgaacaaaaagaagtagctaaa
gcctaa
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