Pan troglodytes (chimpanzee): 451458
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Entry
451458 CDS
T01005
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
451458 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptr03021
]
451458 (PCF11)
03019 Messenger RNA biogenesis [BR:
ptr03019
]
451458 (PCF11)
Transcription machinery [BR:
ptr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
451458 (PCF11)
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
451458 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
451458
NCBI-ProteinID:
XP_016777937
Ensembl:
ENSPTRG00000004126
VGNC:
1093
LinkDB
All DBs
Position
11:78921795..78950507
Genome browser
AA seq
1708 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAIKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSRE
DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG
WEENKSLQQVDEHSKSPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMI
FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF
NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHY
FDEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQTDSATTLFLCREYMENGIKKFVC
LFLIEEVSEVTAQPPPEEEEDQNEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCG
MRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQ
FFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAI
RVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEER
IDTPPACTEESIATPSEIKTENDTVESV
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttct
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaggagccttcaacacctggtacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactaataaggcaacagttactggcaaagcaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacagttggcagtttctcttagtgtt
cagcaggaaacatccaatttaggtcctggatctgcaccatccaaattacatgtttcacag
attccccctatggcaattaaagctcctcatcaggttcctgtgcaatctgagaaaagccgt
ccaggaccatccttacaaattcaggatttaaaaggaactaaccgggatcctcgtctgaac
aggataagccaacattctcatggaaaagatcagagtcacaggaaagaatttctaatgaac
acattaaaccagtctgatactaagacaagtaaaactataccctctgaaaaactaaattca
tccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaatta
gattctaaatcgaaatcgaaatcgaaatcaccctcacctttgaaaaacaaattatctcac
acaaaagacttgaaaaatcaagaatcggaaagtatgaggttgtctgatatgaacaagaga
gatccaagattaaaaaaacatcttcaggataagaccgatggcaaagatgatgatgtgaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaagtcatccgaacac
agactggctggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacaata
acagaagagtcggaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatca
agatctcgatcacccaagtctaggtcaccaattatacattccccaaagagaagagatagg
cggtcacccaaacgaaggcaaagaagtatgtctccaacatcgacacctaaagctggaaaa
attcgccaatctggagctaagcagtcacatatggaagagtttacaccaccttctagggaa
gacagaaatgctaagagaagtactaaacaggatattcgggatccaaggcgaatgaaaaag
actgaagaggagcgaccacaagaaactacaaatcagcattctacaaagtcaggcactgaa
ccaaaggagaatgtagaaaactggcaaagttccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaggttgatgaacatagtaaatctcctcatctgagg
catagggagagctggtcaagcactaaaggaattttatcacctcgagccccaaagcagcaa
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gacttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatctccattcaatgat
cgttttccacttaagcgacctcgatatgaagattcagataaaccatttgtagatagtcca
gcatcaagattcgccggcctggatacaaatcagcgacttacagctttagctgaagacaga
ccgttatttgatggacctagtaggccatcagtagcaagagatggcccaacgaagatgatt
tttgaaggacctaataaattaagccctcgaattgatggacctcccacaccagcttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaggggcca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtgggg
acacctctgcggtttgagggcccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctccaggtggtttgagatttgagggaccagga
ggccagcctgtgggtggtctgaggtttgagggacatcgtggtcaacctgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaggggggtcatggtccatcaggggctgcgattagg
tttgatggacctcatggtcagccaggaggtggaatcagatttgagggccctttgctacag
caaggggttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgagattt
gagggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttggtatcaggtttgaaggccctttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccgtcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaaggactcctggtcag
ccaggccctcagaggtttgatggaccacctggacagcaggttcaacccagatttgacggt
gtacctcaaagatttgatggtccacaacatcagcaagcatcaaggtttgatattcctctt
ggtcttcaaggcacaagatttgacaatcatccttcacaaaggcttgaatcagtatctttc
aatcagactggtccatataatgatccacctggcaatgcttttaatgccccatcccaagga
ctacagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagagtttctctaatccacttaacagagcttctggacactat
tttgatgaaaaaaatcttcagagttctcaatttggaaactttggcaatatacctgctcca
atgacagtaggaaatattcaggcatctcaacaggttctgagtggtgttgctcagccagta
gcttttggtcaaggacaacagtttttaccagttcatccacaaaatcctggatttgttcag
aatccttcaggagccctccctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattgttttcaaaattgctaaaaacaggaattctcaaattgtcccaaactgattca
gctacaacactgttcctctgtagagaatacatggagaatggtattaagaaatttgtatgt
ctcttcttaattgaagaagtaagtgaagtaactgctcagcctccccctgaagaggaggaa
gatcaaaatgaagatcaagatgttccagatcttactaattttacagttgaagaattgaaa
caacgttatgacagtgttataaatcgactgtacactggtattcagtgttactcttgtgga
atgaggtttacaacatcacagacagatgtttatgcagatcatttggactggcattatcgg
caaaatagaactgaaaaggatgttagcagaaaagtcactcatagacgttggtactacagt
ttaacagactggatagaatttgaggagatagctgatctggaagaacgggcaaagagccag
ttttttgaaaaggtgcatgaagaagttgtgctcaaaactcaagaggctgctaaagaaaaa
gagttccaaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaa
gaacaatttgaacaatactgggatgaagaagaggaggaatggcatttgaaaaatgctatt
agagtagatggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttca
tttgattgtacaccatctcccagcaagacaccagttgaaaaccccttgaatattatgttg
aacattgtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacga
attgatacaccaccagcttgtacagaggaaagcatagcaacaccctctgaaattaaaaca
gaaaatgacacagtcgagtcagtttaa
DBGET
integrated database retrieval system
