Puccinia triticina (wheat leaf rust): PtA15_4A142
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Entry
PtA15_4A142 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03022
Basal transcription factors
ptrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PtA15_4A142
09124 Replication and repair
03420 Nucleotide excision repair
PtA15_4A142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrc03021
]
PtA15_4A142
03400 DNA repair and recombination proteins [BR:
ptrc03400
]
PtA15_4A142
Transcription machinery [BR:
ptrc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PtA15_4A142
DNA repair and recombination proteins [BR:
ptrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PtA15_4A142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Fucokinase
Tfb4
Motif
Other DBs
NCBI-GeneID:
77808891
NCBI-ProteinID:
XP_053019249
LinkDB
All DBs
Position
4A:join(1364471..1364757,1364835..1364967,1365074..1365170,1365290..1365395,1365484..1365591,1365808..1365878,1365958..1366327,1366457..1366676)
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AA seq
463 aa
AA seq
DB search
MARPEDTESEEDPDGDWIPGTAARADRKAKGAQTDRAKAAGPQKKHKKKATAYASKDGEG
YSWEEEYKRSWDILREDESGSLESAVNQLIANKRRRVIRDTTSIQRGIIRHLCLIIDVSL
AMTDRDLRPNRLDMSLNYAQEFVTEFFDQNPISQLCILITKDAIAERLSGLSGNPLDHHK
ALSNKAKLTPSGEPSLQNSLEMARASLAHLPSHGSREVLVIFGSLTTCDPDDINKTLENL
EKDRMRVSMVGLAAEVRICKEICKRTQGHYGVILNEHHFKELLFEAISPPPIAKSASNGP
KTQSSSLIQMGFPNKITHDEHQVDASSHSFCACHSKLQSTGFICPRCGSKNCEIPTNCSV
CGLTIVSSPHLARSYRHLFPVSNWIEKNANSLPDQTLKCFGCDKEMQMNKQPPANDKSNG
DPVNAAKANNPSMNVYHCPRCKNMFCYECDVYHEQLGLCPGCC
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaccggaagacaccgaatcggaagaagacccggatggcgattggatacccggc
acggcagcaagggcagaccgaaaagcgaaaggagctcagacagatcgggccaaggctgcc
ggcccgcagaagaagcacaagaagaaagcaacagcctacgccagcaaagacggagaagga
tactcctgggaggaagaatacaagcggagttgggacattctgagggaagacgaatctggc
agtctcgaaagtgcggtcaaccaactgattgcaaacaaacgccggagagtcatacgtgat
accacttcgattcaacgcgggatcatcaggcatctctgtttgataatagatgtttcgctc
gccatgaccgatcgcgaccttcgtccgaaccgactggatatgtcgcttaattatgcccag
gaattcgtcacagagttcttcgatcagaatccaatcagtcaattatgtatcctcatcacg
aaggacgcaattgccgaaaggttgagtggtttatcaggaaatccattggatcatcataaa
gcactcagcaataaagcgaaattgactccttctggagaaccttcattacaaaattcatta
gagatggctcgagctagtctggcacatttaccatcacatggctcaagggaagtactcgta
atctttggctcacttactacttgtgatccagatgatatcaataaaacccttgaaaactta
gagaaagatcgaatgagagtctccatggtcggtctagctgcagaggtcagaatttgtaag
gagatttgtaaacgcacacaaggtcactatggcgtgatattgaatgaacatcatttcaaa
gaactgttgtttgaggcgatttcacctccaccgatcgcgaagtcggcgtcgaacggaccg
aaaacgcagagctcaagtctcatccaaatgggcttcccaaataagatcacccatgacgaa
caccaagtcgatgcatcgagccattcgttctgtgcatgccattcgaagctccagtcgacc
ggctttatctgccctcgctgtggatctaaaaactgcgaaatccctacaaactgttctgtc
tgtggtttgaccatcgtcagctcgcctcatctggctagaagttatcgacatctatttccc
gtcagcaattggattgaaaagaacgctaattctctcccagatcaaactttgaaatgcttt
ggttgcgacaaagaaatgcaaatgaacaaacagcccccggccaatgataaaagtaatggt
gatccggttaatgccgccaaagctaacaatccttcaatgaatgtatatcattgtccccga
tgtaaaaatatgttttgttacgagtgcgatgtttatcatgaacaacttggcttatgtcct
ggttgctgttaa
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