KEGG   Puccinia triticina (wheat leaf rust): PtA15_4A342
Entry
PtA15_4A342       CDS       T09180                                 
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ptrc  Puccinia triticina (wheat leaf rust)
Pathway
ptrc03030  DNA replication
ptrc03410  Base excision repair
ptrc03420  Nucleotide excision repair
ptrc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptrc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PtA15_4A342
   03410 Base excision repair
    PtA15_4A342
   03420 Nucleotide excision repair
    PtA15_4A342
   03430 Mismatch repair
    PtA15_4A342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptrc03032]
    PtA15_4A342
   03400 DNA repair and recombination proteins [BR:ptrc03400]
    PtA15_4A342
Enzymes [BR:ptrc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PtA15_4A342
    6.5.1.6  DNA ligase (ATP or NAD+)
     PtA15_4A342
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PtA15_4A342
DNA replication proteins [BR:ptrc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PtA15_4A342
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PtA15_4A342
DNA repair and recombination proteins [BR:ptrc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PtA15_4A342
   NER (nucleotide excision repair)
    Other NER factors
     PtA15_4A342
   MMR (mismatch excision repair)
    Other MMR factors
     PtA15_4A342
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Presenilin
Other DBs
NCBI-GeneID: 77809112
NCBI-ProteinID: XP_053019448
LinkDB
Position
4A:join(2778917..2779876,2779948..2780110,2780218..2780510,2780601..2781113,2781207..2781554,2781629..2781724,2781787..2781897)
AA seq 827 aa
MGGQPATSSSSSSNGPTKQVTLNKFFTKPVGHKPALVQTTVNSLFNKQNRKKSPEDISEE
RVNQDLKRAPPVDVEEDENATRSSKRVKSSQSKKDDSEPNSQPTEESNEEPVQTNKKISK
KQSKTKVEEEESSELKLSDAPIKKQEDPVIQQEENSEDEEDAEDVANLACGDDLTELEGG
VSWEKGKPVPYASLAHTFNLIDGTTKRLEITKYLTQYLIQVIDRTPNELLKVIYLCINRL
CPDYEGIELGIGESLLIKAIGSSMGRTIAQVKADFKKVGDLGSVAQNSRTTQKTMFKPKL
LTVNSVYQDLKTIATTSGHSSQAKKVGIITKLLASCQGEEAKFVIRSLEGKLRIGLAERT
VLVALANAAVRTGVGHKSNSKRKSSSEELAKEIVEGTEIVKAVFSEIPSYDLVIPALLQG
GIRGLRENCKLTPGVPLKPMLAKPTKAISEVLDRFEGQKFTCEYKYDGERAQIHFLSDGS
ISIFSRNSENMSVKYPDMVDQLPRAIKKEVTRNFVLDAEAVAWDRTTKKILPFQELSKRK
RKDVKAEDITIQVHIFAFDLLYLNDEPLINTDFNHRRGLLKEHFNEIEGEFSFATSVDVD
NVDEIQSFLDESVKAGCEGLMVKMLDGTSAHYEPSRRSMNWLKVKKDYLAGIGDSLDLVV
VGAYHGKGKRTNVYGAFLLACYEPESETYQTICKLGTGFSEEDLESHHKKLEPLELTVQK
KYFDVGEAKPDVWFEPKIVWEVLAADLSLSPVYSAAKGLCGDGTRGVSLRFPRYIKERDD
KTADDATVSEQVAEMYKKQASAQDGTHGGGPRKKGKKGKEDADDDFW
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgggtggccagcccgcaacctcatcctcttcgagctcgaatggacccaccaaacaggtc
accttgaataaattcttcaccaaacctgtcggccataaacccgctctagtacagacgact
gtcaatagcctcttcaataaacagaacaggaaaaagtctccggaagacatcagcgaggaa
cgcgtcaatcaagatctcaaacgagcaccacctgttgatgtagaggaggacgagaatgca
accaggagttcgaaacgcgtcaaatcgagtcagagcaagaaagatgatagtgaaccaaat
agtcagccaactgaagagtctaacgaggagccagtccaaacaaataaaaaaatctcaaaa
aagcaatcaaagacgaaagttgaagaggaagaatcaagcgagctcaaactctctgatgca
cctattaagaaacaagaagacccggtgatccaacaagaagaaaattctgaggatgaagag
gacgcagaagatgtagccaacttagcctgtggcgatgatttaactgagctggagggtggg
gtgagttgggagaagggcaagccggttccttacgcaagtctagcgcatacattcaatttg
atcgatggcacgacgaaacgactggagatcacgaaatatttaacccagtacttgattcaa
gtaatcgatcggacacccaacgagctgctcaaagtgatctacctatgtatcaatcgattg
tgtcctgattacgaaggcatcgagctaggcattggcgagtctctcctgatcaaggctatc
ggatcgtcaatgggtcgaaccatcgcccaggtcaaggccgatttcaagaaggtcggcgat
ctcggtagcgtcgctcaaaacagccgaaccacacaaaagacgatgttcaaacctaaactc
ttaacggtcaacagtgtctatcaagatttgaagacaattgctactacttcaggccattca
tctcaagcgaagaaagtgggtatcattaccaagttgctcgcgtcctgtcaaggtgaagaa
gccaaatttgtgatcaggtcactggagggtaaactacgaatcggattagctgaaaggacg
gtcttagtggctcttgcaaacgccgccgtcagaactggtgttggtcataagtccaactcg
aagcgtaagagctcgtcggaggagttggcaaaggagattgtggaagggaccgagatcgtc
aaagccgtcttttccgagattccgtcgtacgatctcgtcatccccgcgttgctccaagga
ggtattagaggactccgggagaactgcaaattgacgcccggcgtcccattgaaaccaatg
ctggccaaacccaccaaggccatttcggaggtcctggacagattcgaggggcaaaagttc
acctgtgaatacaaatatgatggcgaaagagcgcagatacatttcctaagcgatggatcg
attagtatctttagtaggaattctgaaaacatgagcgtgaaatatccggatatggtggat
caattaccgcgagcgatcaagaaggaagtaacgcgaaatttcgtgttggatgccgaagcg
gtcgcatgggatcggacgacgaagaagatcctgccgttccaagaactgagcaaacggaag
cggaaagacgtcaaggcagaggacatcacgatccaagtgcatatctttgcattcgatctg
ctttacctcaacgacgaaccgctgatcaatacggatttcaatcatcggagagggttgctg
aaggagcatttcaatgagatcgagggggaattcagctttgctacgtccgttgatgtcgac
aatgtagacgagatccagtcgttccttgatgagagtgtcaaggcgggatgtgaaggattg
atggtgaagatgttggatgggacaagtgcccattatgagccgagcagacgaagtatgaac
tggctcaaagtcaagaaagactatctggcaggcataggagattccctggacctagtagtc
gttggggcgtaccatgggaaagggaagcgaacgaacgtgtacggggcgttcctgctagcg
tgttacgagccggagtcggagacgtaccagacgatctgcaagctgggcacgggcttttcg
gaggaggacctcgagtctcatcacaagaaactcgagccactggagctgaccgtccagaag
aagtacttcgatgtcggcgaggccaagccggatgtctggttcgagccgaagatcgtctgg
gaggtcttggccgccgatctcagtctcagtcccgtgtacagtgccgccaaaggtctatgt
ggtgatgggactcggggcgtctcgctccggtttccgcggtacatcaaggagcgggacgac
aagacggccgacgacgcgacggtctccgaacaggtcgcggagatgtataagaagcaggcc
tcggcgcaggatggcacccatgggggaggccctcggaagaagggcaagaaaggaaaagag
gacgcagatgatgatttctggtga

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