Pseudomonas tremae: I9H09_16165
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Entry
I9H09_16165 CDS
T08237
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I9H09_16165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_16165 (mfd)
Enzymes [BR:
ptre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I9H09_16165 (mfd)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I9H09_16165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
UQB35109
LinkDB
All DBs
Position
3593676..3597128
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVDAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPAQVLPDL
SIEAKATQPLAALSKFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDG
KDRLAITIAPLDDGLLLEQPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQIAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
EMAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDALKDLQVEMIDRFGLLPEPTKHLVRITLLKLQAEQLGIKK
VDAGPQGGRIEFAADTPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LFERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcatctttctgccgctgcaggcaaacaacactggggcaac
cttcccggtgctgcactgagcctggccattgccgaggccgccagcgcagccaagcgcttc
accctgcttttgaccgccgacagccaaagcgccgagcgtcttgagcaagagctgaagttt
ttcgcccccacgctgccggtgctgcacttcccggactgggaaaccctgccctacgacttg
ttttcgccgcatcaggacatcatctcccagcgtatcgccagcctttaccgcttgccggag
ctggagcatggcgttttggtagtacctattaccacggccctacacagactcgcgccgacc
aaattcctgcttggcagcagcctggtgctggatgtcggtcagaagctcgacgtggacgcc
atgcgcacccgtctggaagccagcggctaccgctatgtggacacggtttacgagcacggc
gagttcactgttcgtggggcgctgatcgatctgttcccgatgggcagcaagctgccgttt
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcacctttgacccggacacccag
cgctccatcgacaaggtcgaatcggtgcgtctgttgccggcccgcgaatttccgctgcag
aaagaggaagtcacgcgcttcaaggcgcgctttcgcgagcgcttcgatgtcgacttccga
cgcagcccgatctttcaggacttgagcagcggcattaccccggccggcatcgagtactac
ataccgctgttcttcgaagaaacctcgaccttgttcgattacctgccgcaggacacccaa
gtgttctcgctgccaggcatcgagcaggcagcagagaacttctggaacgacgtgcgcaat
cgttacgaagagcgtcgcgtcgatccggcccgcccgctgctgcctccggccgagttgttc
ctgccggtggaagactgcttcgcgcgcctgaagaactggccgcgcgtggtggcgagccag
caggacgtagacgccggtgccggacgcgaacgctttcctgcgcaggttctgccagacctg
tccatcgaagccaaggccacccagccattggcggcattgtcgaaattcctcgacgagttc
cccggtcgcgtgctgttcaccgccgaatccgccggacgtcgtgaagtgctgctggaactg
ctcgagcgcctgaagctgcgcccgaaaacggtcgacagctggctcgattttgtcgacggc
aaagaccgcctggcaatcaccatcgcaccgctggacgacggcctgctgcttgaacagcct
gcgctggcgctggttgctgaaagcccgctgttcggtcaacgcgtgatgcagcgtcggcgc
cgtgaaaaacgcaccgacggcggcaacaacgatgccgtgatcaagaacctgaccgagctg
cgcgaaggcgcgccggtggtgcatatcgatcatggcgtcggtcgttatctgggactcgcg
acgctggaagtcgagaaccagatcgctgaatttctgatgctggcctacgccgaggacgcc
aagctttacgtaccggtcgccaacctgcacctgatcgcacgctatacaggcagcgatgac
gagatggcgccgttacaccggctgggctcggaaacctggcagaaggccaaacgcaaggca
gccgaacaggtccgcgacgtggcggccgaattgctcgatatctatgcgcgccgcgccgcc
cgcgaaggctatgcgttcgccgacccgaaagccgattacgcaacgttcagtgccggtttt
ccgttcgaggaaactccggaccagcagaccaccatcgaagccgtgcgcgccgacatgctg
gcgcccaaaccgatggaccgactggtgtgcggcgacgtgggcttcggcaagaccgaagtg
gccatgcgtgccgcattcattgccgttcacggcgggcgtcaggtcgcaatcctggtgccc
accacacttctcgcccagcagcactacaacagttttcgcgaccgttttgccgactggccg
gtaactgtcgaggtgatgagccgcttcaaatccgccaaggaagtcagtgctgccgttgcc
gatctggcagaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgac
gtgaagatcaaaaacctcggtctggtgatcatcgacgaagaacaccgcttcggcgtgcgc
cagaaagaacagctcaaggcgctgcgcagcgaagtcgacattctgaccctgaccgcaaca
ccgatcccgcgcaccctgaacatggccgtgtcgggcatgcgtgatctgtcgatcatcgcc
acgccaccggcgcgcaggctgtcggtccgcaccttcgtcatggagcagaacaaaccgacg
atcaaggaagccctgctgcgcgagttactgcgcggcgggcaagtctattacctgcacaac
gacgtcaagaccatcgagaaatgcgcggcagacctggccgaactggtgccggaagcgcgt
atcggcatcggccacgggcagatgcgcgaacgtgatctcgagcaggtcatgagcgacttc
taccacaagcgcttcaatgtgctgatcgcctcgaccatcatcgaaaccggtatcgacgtg
ccgagcgccaacaccatcatcatcgagcgcgcggacaagtttggcctggctcagttgcac
cagttgcgcggtcgcgtcgggcgcagtcaccaccaggcctatgcctacctgctgacccca
ccgcgcaagcagatcacccacgacgccgaaaagcgcctggaagcaatcgccaatactcag
gacctcggcgcaggcttcgtgcttgccaccaatgacctggaaatccgcggcgcaggtgag
ctgctgggtgatggccagagcgggcagatccaggcagtgggctttacgctgtacatggag
atgctcgagcgtgcggtcaaggccatccgcaagggcgaacagcctaaccttgatcaaccg
ctgggcggcggtccggaaataaacctgcgcgtgccggccctgatcccggaagcctacctg
ccagacgtacacacccgcctgattctctacaagcgcattgccaacgcggcagacgaagat
gcgctgaaggacctgcaagtcgaaatgatcgaccgattcggtctgctgccagagccgacc
aagcatctggtccggatcacgctgctcaagttgcaggccgaacaattgggtatcaagaaa
gtcgacgcgggtccccagggtggccgtatcgagttcgcggccgataccccggttgacccg
ctgacgctgatcaagctgatccagagccagcccaaccgctacaagttcgagggtgccaca
ctgttcaaattcatggtgccaatggagcgtccggaagagcgcttcaatacgatcgaagcg
ctgtttgagcgcctgaccccgaaaactgcttga
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