Paenibacillus tritici: KDC22_05185
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Entry
KDC22_05185 CDS
T07560
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptri
Paenibacillus tritici
Pathway
ptri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KDC22_05185 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptri03400
]
KDC22_05185 (ligD)
Enzymes [BR:
ptri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KDC22_05185 (ligD)
DNA repair and recombination proteins [BR:
ptri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KDC22_05185 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QUL55940
LinkDB
All DBs
Position
complement(1234642..1235538)
Genome browser
AA seq
298 aa
AA seq
DB search
MPQKVRGTITAEGHEITITNPDKPLWPERGITKQIYLQKLAALSPYLLRYCKDRLLTVIR
YPHGVPGMSFYQKNAPEPLPEYVHTAVHENITYIVLQGLPELLWLGNLAALEFHPSLHYA
GSTLPCEWMIDLDPSLEEEPRIMEAAALVGEVLKSLGLESVPKTSGATGVQIIVPVEPGV
TFDDLRRIGHFVGRYVTEKRPDLFTLERLKKHRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQRDVKPTDYHLLNIEDRLARTGDLIAGVPPQPVEAIIAKLPPGQQ
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagaaggttagaggcaccattaccgcagagggacatgagattaccattacgaac
ccggataagccgctgtggcctgaacgcggcatcaccaagcagatttatctgcaaaagctg
gccgccctctccccctatctgttgcgctattgcaaagacaggctgctgacggtgatccgt
tatccccacggtgtgccgggaatgtccttttatcagaagaacgccccggagccgctaccg
gaatacgtccatacggctgtgcatgagaatattacctatattgtgctgcaagggctgccg
gagctgctctggctgggcaatctagccgcactggaatttcatccctcgctacattacgcc
ggcagtacactgccctgcgaatggatgattgatctggacccttcgcttgaagaggagccg
cgtatcatggaggcagccgcccttgtgggggaggtgctgaagtcgcttggtctggaatcc
gttccgaagacctccggagccaccggagtgcagattatcgttccggtggagccgggcgta
accttcgatgacctgcgccggatcgggcatttcgtaggccgttatgtcacggagaagcgg
cctgatcttttcaccctggagcgcctgaagaaacaccgcggggacaaaatatactttgat
tacctgcagcactacggcggcaaaacacttgctgcaccgtataccccgcgtgccaggccg
cttgccaccgtctcaacgcccctcctgtgggaggaagtgcaacgggacgtcaagccaaca
gattaccacctgctgaatattgaggaccgtctggcccggacaggagatctgatcgcaggg
gttcctccccagcctgtcgaagcaattattgccaagctgcccccaggacagcaataa
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