Pseudomonas triclosanedens: OU419_14150
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Entry
OU419_14150 CDS
T09689
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OU419_14150 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrl03400
]
OU419_14150 (ligD)
Enzymes [BR:
ptrl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OU419_14150 (ligD)
DNA repair and recombination proteins [BR:
ptrl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OU419_14150 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WAI52341
LinkDB
All DBs
Position
complement(3061508..3064039)
Genome browser
AA seq
843 aa
AA seq
DB search
MPDANALQEYARKRDFSGTPEPRGEAAAPADEYIFVVQKHDASHLHYDFRLELDGVLKSW
AVPKGPCLDPSVKRLAIEVEDHPLDYARFEGHIPEGHYGAGDVIVWDEGRWQPLGDPHAG
LKSGHLKFRLQGRKLSGSWNLVRTRMPGRQPQWFIIKGRDGEARDFPRFDILAKEPLSVL
SGQPLPSEMTAPASNRGLAGKPAKKPAATSAKPAAPRKSARQRLPERFAPQLATLVDAPP
AGDWRYEIKIDGYRILARLDHGNVRLLTRNGHDWSAKLPELCKALAGLEVDSAWLDGEIL
VVDEEGRPDFQRLQNAFDAGLSEAIRYTLFDLLWLDGMDYRDKPLEERRAALQDLLRESS
SDRLRYSEDFTDDPRSILDSACRLGLEGLIGKRAGSRYVERRSGDWIKLKCKRRQEFVIV
GYSEPKGSRTHFGALLLGLHDKDGELRYAGKVGTGFSATSLKAIHQQLQPLVRQRCPLKT
LPKGQDARGVTWLRPQLLGEVAFAEITREGLVRQAVFHGLRSDKPAREIVREEPRSTHKR
SPGAAAGRGNVVAGIAITHPDRVVDPGSALHKIDVARYYEQAAERILPWLGDRPVSLVRA
PDGVGGEQFFQRHASRTELPGVEQLEPRLDPGHAPLLRIANTRGLVGAAQMGVLELHTWN
ASVDDLEKPDRFILDLDPDPALPWKRMIEATRLTLTLLDELGLSAFLKTSGGKGMHILVP
LRRDYGWDEVKDFAHAISRHMAKLMPDRFSAISGPKNRIGKIFIDYLRNTRGASTVCVWS
VRARDGLPVSVPISRDELADLKGANAWNIQNVAQRLGGPDPWSAWPSARQQRLGRKMWQQ
LEG
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatgccaacgctctgcaggaatacgcgcgcaagcgtgatttcagtggcacacct
gagccacgcggcgaggctgcggcccccgccgacgaatacatcttcgtggtgcagaagcac
gatgcgagtcacctgcactacgacttccgcctggaactcgatggcgtgctgaaaagctgg
gcagtgcccaaggggccgtgccttgatcctagcgtcaagcgcctggccatcgaggtcgag
gaccacccgctggattacgcacgcttcgagggccacattcccgaaggccactatggcgcg
ggcgatgtgatcgtctgggatgaaggccgctggcagccgctgggcgatccccacgccggg
ctgaaaagcgggcatctgaaattccgcttgcaaggccgcaagctgtccggcagttggaac
ctggtacgcacgcgcatgcctggccgccagccgcagtggttcatcatcaaggggcgcgat
ggcgaggcgcgcgatttcccgcgcttcgacattctcgccaaggagccgctcagtgtgctc
agcggccagccgctgcccagcgaaatgacggcgccggccagcaaccgtggcttggccggg
aagcccgcgaagaagccagccgcaacctcggcgaaaccggccgcgccgcgcaagtcggcc
cgacagcggctgcccgagcgcttcgcgccgcaactggcaacgctggtcgatgcgccgccc
gcaggcgactggcgctacgagatcaagatcgacggctatcgcatccttgcacgcctcgac
cacggcaacgtccggctgctgacccgcaacggccatgactggtcggcgaagctgcccgag
ctgtgcaaggcgctggcagggctggaagtcgactcggcctggctggacggcgagatcctg
gtggtggacgaggagggccggccggatttccagcgcctgcagaatgccttcgatgccggt
ctctccgaagcgattcgctacacgctgttcgacctgctctggctcgacggcatggattac
cgcgacaagccactcgaagagcgccgcgcagcgttgcaggatctgctgcgtgaaagctcc
agcgaccgcctgcgctactccgaagacttcaccgatgacccgcgcagcattctcgacagt
gcctgccggctggggctcgaagggctgatcggcaagcgcgccggcagccgctacgtcgag
cgccgctccggcgactggatcaagctcaagtgcaagcgccggcaggagttcgtcatcgtc
ggctacagcgaacccaaagggtcgcggacgcatttcggtgcactgctgctcggtttgcac
gacaaggatggcgaactgcgatacgccggcaaagtcggtaccggcttcagcgccaccagc
ctgaaggccatccatcagcaactccagccgctggtgcgccaacgctgcccgctgaagacg
ctgcccaaggggcaggacgccaggggagtcacctggctgcgtccgcaactgctgggtgaa
gtggcgtttgccgagattacccgcgaaggcctggtgcgccaggcggtatttcatggtctg
cgcagcgacaagccggccagggaaatcgtacgcgaggaacccaggtccacgcacaagcgc
tcacccggcgctgccgccgggcgtggcaacgttgtcgccgggattgccattacccatccc
gaccgggtggtcgatcccggcagcgcgctgcacaagatcgacgtggcgcgctactacgaa
caggccgccgagcgcatattgccgtggctcggcgaccgcccggtatcgctggttcgggcg
ccggatggggttggcggcgagcaattcttccagcgccatgcctcgcgcaccgagcttccc
ggtgtcgagcaacttgaaccgcgactggatcccggccacgcgccgctgttgcgtatcgcc
aatacccgtgggttggtcggtgcggcccagatgggcgtgctggaactgcatacctggaat
gccagcgtcgatgacctggagaaaccggaccgcttcatcctggacctcgatccggacccg
gcgctgccctggaaacgcatgatcgaggcgacccgactgacactcaccctgctcgacgaa
ctgggtctgagcgccttcctcaagaccagcggcggcaagggcatgcacattctggtgccg
ctgcgccgcgattatggatgggatgaagtgaaggacttcgcccacgccatttcccggcac
atggcgaagctgatgccggatcgtttcagtgccatttccggaccgaagaatcgtatcggc
aagatcttcatcgactacctgcgcaatacccgtggcgccagtaccgtttgcgtctggtca
gtgcgcgcgcgcgatggcctgccggtgtcggtaccgatcagccgtgatgaactggccgac
ctgaagggcgccaatgcctggaatatccagaacgttgcgcagcggctgggcggccctgat
ccctggagcgcatggccttccgcccggcagcaacgcctcggccgcaagatgtggcagcaa
ctggaaggctag
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