Pseudomonas triclosanedens: OU419_26285
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Entry
OU419_26285 CDS
T09689
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU419_26285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrl03019
]
OU419_26285
Enzymes [BR:
ptrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OU419_26285
Messenger RNA biogenesis [BR:
ptrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU419_26285
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WAI49214
LinkDB
All DBs
Position
5671201..5673195
Genome browser
AA seq
664 aa
AA seq
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MSFTSLGLSEALAGAVEAAGYAQPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKIYARDLPLKSACIFGGVGMN
PQVQAVSKGVDVLVACPGRLLDLVGQGSIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRVPAQQKRVLL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRTGEAISLVAPDEEKL
LKAIERLTKQRIPDGDMQGFDPDAVLPEVQQPEPKETSQRQPRKDKAKRGERKDRNRDKP
QSEEQANAAAPSEGEAEQGDKPAGKRRRRGGRGKRKGDGQGGDAQPSSNAQPRESRQPRQ
QQPKPTRAPKVDGNRDPEEFLDDDFDNFGNRADYVSPFPDKDQQRGQRRRGGQGQGQGQN
QGQQRARGQGGQGGGQGQGNGQNRGQGKAARKPNGSGARGQGGNNGQGKQGQRKRGGKAS
TSRMNDAPLREPSEYGAAKPTRQPVVINKRDLIRTDRFPTAEQLEELEPRRKTERPALLT
RNRD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacttccctcggtctctccgaggccctggctggcgctgtcgaagccgccggc
tacgcgcagcccactcccgtacaggaacgagccattcccgccgtactgcaaggccgcgac
ctgatggttgccgcccagaccggcaccggcaagaccggcggcttcgccctcccggttctc
gaacgcctgttccccgaaggccaccctgaccgcgagcatcgccacgggccgcgccaggcc
cgcgtgctggtcctgacaccgacccgcgagctggccgcccaggtccatgacagcttcaag
atctacgcccgcgacctaccgctcaagagtgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccgtctccaagggcgtcgacgtgctcgtcgcctgccccggccgcctg
ctcgatctggtcggccagggcagcatcgacctgtcccatgtggagatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtgaagaaagtcctcgccaag
ctgccgcccaagcgccagaacctgctgttctcggcgaccttctcgaaagacatcgtcgac
ctcgccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgcatcgagcagcgcgtattccgtgtccccgcgcagcagaagcgcgttctgctg
gcgcacctggtgaccgtcggcgcctgggagcaggtactggtgttcacccgcaccaagcac
ggcgccaaccgcctcgccgagtacctgaccaagcatggcctgccggctgccgcgatccac
ggcaacaagagccagaacgcacgcaccaaggccctggccgacttcaaggctaacgacgta
cgtatcctggtcgccaccgatatcgccgcccgcggcctggacatcgaccaactgccccac
gtggtcaactacgagttgcccaacgtcgaggaagactacgtccaccgcatcggccgcacc
ggccgcgccggtcgcacgggcgaggccatctcgctggtggcgccggacgaggagaagctg
ctcaaggccatcgaacgcctgaccaagcaacgcatccctgatggtgacatgcagggcttc
gaccccgacgccgtactgccggaagtccagcagccagagccgaaggaaacctcccagcgc
cagccgcgcaaagacaaggccaagcgcggcgaacgcaaggaccgcaacagggacaaaccg
cagagcgaagagcaggcgaatgccgccgccccctccgaaggcgaagccgaacagggtgac
aaacccgccggcaagcgccgccgtcgcggcgggcgcggcaagcgcaaaggtgacggccag
ggcggcgatgcccagccgagcagcaacgcccaaccacgcgaatcccgccaacctcgccag
cagcagccaaaaccgactcgcgcaccgaaggtcgacggtaaccgcgacccggaagaattc
ctcgacgacgacttcgacaacttcggcaaccgcgccgactatgtcagcccgttcccggac
aaggaccagcaacgcggccagcgccgccgtggcggtcagggccaggggcaaggccagaac
cagggccagcaacgcgctcgcggccagggcggccagggcggcggccaaggccagggcaat
gggcagaaccgtggacaaggcaaggctgccaggaagcccaacggcagcggcgctcgcggc
cagggcggcaacaatggccaaggcaagcagggccagcgcaagcgcggtggcaaggcatcc
acctcgcggatgaatgacgcgccgctgcgcgaaccgagcgagtacggcgcggccaagccg
acccgtcagccggtcgttatcaacaagcgcgacctgatccgcaccgatcgcttccccact
gccgagcagttggaagagctcgaaccgcgacgcaagacagagcgccccgcgctgctgacc
cgcaaccgcgactga
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