Paraburkholderia tropica: G5S35_28720
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Entry
G5S35_28720 CDS
T07044
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptro
Paraburkholderia tropica
Pathway
ptro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5S35_28720 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptro03400
]
G5S35_28720 (ligD)
Enzymes [BR:
ptro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5S35_28720 (ligD)
DNA repair and recombination proteins [BR:
ptro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5S35_28720 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNB15573
LinkDB
All DBs
Position
C:1177347..1179992
Genome browser
AA seq
881 aa
AA seq
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MKRNLSGNLRAYEAKRRFNETPEPAPTRGRARRNGSASFVIQRHDARRLHYDFRLELDGA
LKSWAVPKGPSLDPSVKRLAVHVEDHPLEYGAFEGTIPAGHYGAGTVEIWDHGSWQPEGG
MRAAREGYAHGHLKFTLNGDKLHGGWALVRSPMGDSKQERWLLIKQRDDDAVSEDAFKVT
DGRGERNGHANQREKTPAKTKARDAVKMKNTLADSGAAKKRASKAAEKPLDQTALGKLPG
AVRAAIPHTFAPQLATPADTSPKGEDWLYELKFDGYRVLARVDRREKGGRAVRIFTRSGL
DWSAKFPRQMEALAALDIDSAWLDGEAVVLDDQGVPDFQALQNAFEEGHEDAIVFWLFDL
PWLDGFDLRKVPLETRRAQLAALLERGDQDVLRFSAAFDGDPDDLLQAACAANLEGLVAK
RRESAYTSTRSASWLKLRCARRQEFVIGGYTEPAGSRAGFGALIIGVYDEAGALHYAGRV
GTGFDTALLEKLARELKTRTRKTTPFAEVPAAERRTHVHWVKPELVAEVRFKTWTSAGVV
RQASFVGLRRDKAAASIVREPQSQPVKVKARASSPAHAIDKEANVEDEVSGVRITHPERV
IDERSGTRKIDLVRYFAWIAPHLLPGLRNRPVALVRAPKGVDGELFFQKHANKLQIPHAT
QHADLDPGHAPLLTLDSLEALIGAAQMDTIELHTWNALASHIEKPDRLIFDLDPDPSLDW
ARMREAAQLTRELLEALGLRAWCKTSGGKGLHVVVPITRHSSWDEAKDFAQAVARHMAAT
LPDRFSAKMGPQNRKGRIFVDYLRNGRGATAIEAYAPRARPGLGVSTPIAWDELPRVTGG
DQWNVSNLRERLDALRTDPWHEYADAKQRITAAMWTLLKCE
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcaatctatcgggcaatctgcgggcttacgaagcaaaacgacgcttcaatgaa
acgcctgagcccgcaccgacacgcgggcgtgcgcgtcgcaacggcagcgcgtcgttcgtg
attcagcgccacgacgcgcggcggctgcactacgatttccggctcgaactcgacggcgca
ctcaagtcgtgggcggtgccgaaaggcccgagtctcgatccgtcggtgaagcggctcgcc
gtgcatgtcgaagatcatccgctcgaatatggcgcgttcgaaggcacgattccggcgggt
cattatggcgccggcaccgtcgagatctgggatcacggcagttggcaacccgaaggcggc
atgcgcgccgcgcgcgagggatacgcgcatggccatctgaaattcacgctcaatggcgac
aagctgcacggcggctgggcgctggtgcgtagcccgatgggcgacagcaagcaggagcgc
tggctcctcatcaagcaacgcgacgacgatgcggtgagcgaggacgctttcaaggtcacg
gacgggcgcggcgagagaaacggccatgcgaaccagcgtgaaaagactccggcaaaaacg
aaagcgcgcgatgcggtgaaaatgaaaaacacgttggccgattcgggcgccgcgaaaaaa
cgggcttcgaaagccgctgaaaaaccgttggatcaaaccgcgcttggcaagctgcccggc
gcggttcgcgcggcaataccgcacacgttcgcgcctcaactcgccacgcccgccgacaca
tcgccgaaaggcgaagactggctctacgagctgaaattcgatggttatcgcgtgctcgcc
cgcgtcgaccggcgtgagaaaggcgggcgcgctgtacgcattttcacgcgtagcggtctc
gactggagcgcgaagtttccgcgtcagatggaagcgcttgccgcgctcgatatcgattcc
gcgtggctcgacggcgaagccgtcgtcctcgacgatcaaggcgtaccggattttcaggcg
ctgcaaaacgccttcgaagaagggcatgaggacgccatcgttttctggctgttcgatctg
ccctggctcgacggtttcgatttgcgcaaggtgccgctagaaacgcgccgcgcgcagctt
gccgccttgctcgaacgcggcgatcaggacgtgctgcgtttttccgctgcattcgacggc
gatcccgacgacttactgcaagccgcgtgcgccgcaaatctcgaagggctcgtcgcgaag
cgacgcgaaagcgcctatacgtccacgcgcagcgcgtcgtggctcaagctgcgttgtgcg
cgtcggcaggagtttgtgattggcggctacacggaaccggcgggcagccgcgcgggcttc
ggcgccttgattatcggcgtgtatgacgaagcgggcgcgttgcactatgcgggtcgcgtc
ggcaccggtttcgatacggccttgctggaaaaactcgcgcgcgagttgaaaacgcggacg
cgcaagaccacgccgtttgccgaggtgcccgcggccgagcggcgcacgcatgtgcattgg
gtgaaaccggaactcgtggccgaagtgcgtttcaagacctggacgagcgcgggcgtggtg
cgtcaggcgtcgttcgtcggtctgcgtcgcgacaaggcggcggcatcgatcgtgcgggag
ccgcagtcccagcctgtgaaagtgaaggcgcgtgcatcgtcgcctgcacacgccatcgac
aaggaagccaacgtggaagacgaagtttcaggcgtgcgcatcacgcatcccgagcgcgtg
atcgacgaacgcagcggcacgcgcaagatcgacctagtgcggtattttgcgtggatcgcg
ccgcatttgctgccgggtttgcgcaatcgcccggtcgcgctggtgcgtgcgccgaagggc
gtcgacggcgaactgtttttccagaagcacgcgaacaagttgcagattccgcatgcgacg
cagcatgccgatctcgatcccggacacgcgccgctgctcacgctcgacagtctcgaggcg
ctgatcggcgccgcgcaaatggacacgatcgagctgcatacgtggaacgcgctcgcgagc
catatcgaaaagcccgaccgtctgattttcgacctcgatcccgatccgtcgctcgactgg
gcgcgcatgcgcgaagcggcgcaactcacgcgcgaattgctcgaggcgctcggtctgcgt
gcgtggtgcaagacgagcggcggcaaggggctgcacgttgtggtgccgatcacgcgccac
agcagctgggacgaagcgaaggacttcgcgcaggccgtggcgaggcatatggccgcgacc
ttacccgatcgcttcagcgcgaagatggggccgcagaatcgcaagggccgtattttcgtg
gactatctgcgcaacgggcgcggcgcgaccgcgatcgaggcttacgcgccgcgcgcgcgt
cccggcttgggcgtctcgacgccgatcgcctgggacgagctgccgcgcgtgacgggcggc
gatcagtggaacgtttcgaacctgcgtgagcgcctcgacgcgctgcgcaccgatccgtgg
cacgaatacgccgatgcgaagcagcgcatcacggcggccatgtggacgttgctcaagtgc
gaatga
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