Pseudomonas tritici: HU722_0008820
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Entry
HU722_0008820 CDS
T07594
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptrt
Pseudomonas tritici
Pathway
ptrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU722_0008820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrt03400
]
HU722_0008820 (mfd)
Enzymes [BR:
ptrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU722_0008820 (mfd)
DNA repair and recombination proteins [BR:
ptrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU722_0008820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXH85562
UniProt:
A0A8F5AEU2
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All DBs
Position
complement(1975907..1979356)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFLKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaagctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcccgattgggaaaccctgccctacgacctg
ttctcgccgcatcaggacatcatctcgcagcgcatcgccagcctgtaccgcttgccggaa
ctggcccacggtgtgctggtggtgccgatcaccacggcactgcatcgcctggcaccgacc
aagttcctgctgggcagcagcctggtcctggatatcggccagaagctcgatgtggaacag
atgcgcacgcgcctggaggccagcggctaccgctgcgtcgacacggtgtacgagcacggt
gagtttgcggtgcgcggtgcgctgatcgacctgttcccgatgggcagcaaactgccctat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgttccatcgacaaagtcgagtcgatcaagctgctgccggcgcgggaatttccattacag
aaagatgcggtcacgcgcttcaaggcgcgcttccgcgagcgcttcgacgtcgacttccgt
cgttgcccgatctttcaggacttgagcagcgggattacacccgcgggtatcgagtactac
ctgccgctgttcttcgacgaaacgtctaccttgttcgactacctgccacaggacacccaa
gtgttctcgctgccgggtatcgagcaagcagcggaaaacttctggaacgacgtgcgtaac
cgctatgaagagcgccgcgttgatccgtcccggcctttattgccgcccgccgagctgttc
ctgccggtggaagactgctttgcccgtcttaaaaactggccccgcgtggtcgccagccaa
caggatgtggacgccggcagcggccgcgagcgcttcccggcggggacgctgccggatctg
gcgatccaggccaaagccacacaaccgctggaagcgctgtccaacttcctgggcgacttc
ccaggccgcgtgctgtttaccgcagagtccgccgggcgtcgggaagtcctgctggagctg
ttggaacgcctgaagctgcgaccgaaaaccgtcgacagctggccggactttttaaaaagc
aaagaacgcctggcgatcaccatcgcaccgctggacgaaggcctgttgctggacgacccg
gccctggcgctgatcgccgagagcccgctgttcggccagcgcgtgatgcaacgtcgacgc
cgcgaaaaacgcgccgacgccaacaacgacgcggtgatcaaaaacctcaccgagttgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggccgctacctcggcctgcaaacc
ctggaaatcgacaaccaggctgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccagcctgcatttgatcgcccgttacaccggcagcgacgacgcc
ctggcgccgttgcatcgcctgggttccgagacctggcagaaagccaagcgcaaggccgcc
gagcaagtgcgcgacgtcgccgccgaactgctcgacatctatgcccgccgtgctgcgcgc
gaaggttacgcgttcgccgacccgaaagccgactacgccaccttcagcgccggctttgct
ttcgaagaaaccccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgtggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgccttcatcgccgtgcacggcggccgccaggtggcgatcctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgccgccatcgctgac
ctggcggaaggcaagatcgacatcgtgatcggcacccacaagctgttgtcggacgatgtg
aagatcaagaacctcggcctggtgatcatcgacgaagaacaccgttttggggtacgtcag
aaggaacaactcaaggccctgcgcagcgaagtcgacatcctcaccctcaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcggcgcttgtcggtacgcacctttgtgatggagcagaacaaaagcacggtc
aaggaagcactgctacgggaattgctgcgcggcgggcaggtttactacttgcacaacgat
gtgaagaccatcgagaaatgcgctgccgacctcgccgaattggtaccggaagcgcgcatc
gccatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggtatcgacgtgccg
agcgctaacaccatcatcatcgagcgcgccgacaaattcggcctggcgcagttgcaccaa
ctgcgcggccgggtgggtcgcagtcaccaccaggcgtatgcctatttgctcacgccgccg
cgccagcagatcacttccgacgcggaaaagcgcctggaagccatcgccaacactcaggac
ctgggcgccggttttgtactggccaccaacgacctggaaatccgtggcgccggcgaactg
ctgggcgacggccagagcgggcagatccaggcggtgggcttcaccctgtatatggagatg
cttgagcgcgcggtgaaagccatccgcaagggcgagcaaccgaacctcgatcaaccgctg
ggcggcggtccggaaatcaacctgcgcttgccggcgttgattcccgaagactatctgccg
gacgtgcatgcgcggttgatcctgtacaaacgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcctgaccttgctcaaattgcaggccgagcagttgggcatcaagaaagtc
gacgccgggccgcaaggcgggcgcatcgaatttgaagcgcagacgccggttgacccgttg
gtgctgatcaagttgattcagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgcgctgaagaacgctttaatacactggaggcgttg
ttcgagcgcctcatcccgaaatctgcttga
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