Pseudomonas tritici: HU722_0014050
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Entry
HU722_0014050 CDS
T07594
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptrt
Pseudomonas tritici
Pathway
ptrt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU722_0014050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrt03400
]
HU722_0014050 (ligD)
Enzymes [BR:
ptrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU722_0014050 (ligD)
DNA repair and recombination proteins [BR:
ptrt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU722_0014050 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXH81177
UniProt:
A0A8F4WRS7
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All DBs
Position
complement(3155821..3158298)
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AA seq
825 aa
AA seq
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MPKPLSDYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGNIPAGQYGAGDVIVWDRGVWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDAQARPADDYDIVQAQPN
SVLSNASVGKPNAKAKPKPKPQKTLATLPEQFAPQLATLVDRAPEGDWHYEIKFDGYRML
ARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLNGQDQRQAPVEERRAALKAALAGSRSKLLRFSEAFTAHHRD
IFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQASLKSIYAQLTPLECSTSPLEKPLTSAQARGVHWVQPTL
VGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKTAKKNSGNVNITHPDR
VIDKQTGTQKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNI
KQLDQALDPGHARLMEIDSAAALIGAVQMGTVEFHTWGGTTDKIETPDLFVLDLDPDPAL
PWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDNWDTVKAFAKAIAQFMT
AQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLR
GAQQWTVVNVHERLKALKVDPWDGYANRQKISKKMWDKLGAHPPP
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcccctcagcgactacaaccgcaagcgcgacttcgggattaccgccgaaccg
gcaggcagtgcgcccgccggcaaacggaaggcctcggcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcactatgacttccgcctggagcttgatggcgtgttgctcagt
tgggcggtacccaaaggcccgagcctggacccgagccagaaacgcctggccgtccacgtt
gaagatcaccccctcggctatggcagcttcgaaggcaatattccggcgggtcagtacggc
gcaggcgacgttatcgtgtgggaccgcggcgtgtggcaaccccatgacgacccgcacaag
gcctacgccgccggcaagctcaaattcaccttggttggcgagaagctctcaggcgactgg
accctggtgcgcacccgcctgaagggcagcggcgataaacaacaatggctgctgatcaag
gaaaaggacgcacaggcacgccctgccgatgactacgatattgtccaggcccaaccgaac
agcgtgctcagcaacgcctcggtcggcaaacccaacgctaaagccaaacccaagcccaag
ccgcaaaaaaccttagccaccctccccgagcaattcgccccgcaattggccacgctggtg
gaccgcgcgccagaaggcgactggcattacgaaatcaagttcgacggttaccgcatgctc
gcgcgcattcgtgacggcgaggtacgcctgttcacccgcaatggccatgactggaccgaa
cgcctgccccgtcaagccaaggccctgcaagcgctgaaactcaaggacagctggctcgac
ggtgaggtggtcagcctaaacggcgacggcctgccggacttccaggcgctgcaaaacgcg
tttgatattgggcgcagcctggacattgtctactacctgttcgatgcgccgttcctcaat
ggccaggaccaacgccaggcgcctgtcgaggagcgccgcgcagccctcaaggccgcgctg
gccggtagtcgaagcaagttgctgcgcttctccgaagcgttcactgcgcaccatcgtgac
atctttgaaagcgcatgcgacctggccctggaaggcgtgatcggtaaacgcctgggcagc
ccctacgtgtcgagtcgcagtgccgattggatcaagctcaaatgccgcttgcgccaagag
tttgtgattgttggctacacccggccgcagggctcacgcagtggtttcggggcgctgttg
ctggcggtgaatgatgattccgggctggtgtacgccgggcgggtgggcacaggctttgat
caggcgtcgctgaagtcgatctacgcgcaacttacgccattggagtgcagcacgtccccc
ctggaaaaaccgctgaccagcgcccaggcccgcggtgtgcattgggtgcagccgacgctg
gttggcgaggtgcaatttgccgaatggacccgggaaggcgtggttcgccaggccgcgttc
gtcggcatgcggaccgataaaccggctgcgcagatcattcatgagcaaccgcgcacggcc
aaatccatgaaaaccgcaaaaaaaaacagcggcaacgtgaacatcacccatcccgaccgc
gtaatcgataagcaaaccggtacgcaaaaacagcaactggcgcagttctacgacagcatc
agccaatggattctgcccttcctgcggcaccgtccggtttcgctgctcagagcgcctgag
ggcattgaaggcgagcagttcttccagaagcattccgagcggctcgcgattcctaacatc
aagcaactggatcaggcgctcgaccctggtcatgcacgcctgatggaaatcgacagcgcc
gctgcattgatcggtgcggtgcaaatgggcaccgtggagttccacacttggggcggcacc
accgacaagatcgaaaccccggacctgtttgtgctcgatctcgaccccgacccggcactg
ccttggaaagccatgttggaagcggcgcagctcacgctgtcggtgcttgacgaattgggg
ctgcaagcgttcgtcaagaccagcggtggcaagggcctgcacctggtcgtgccactggcg
cggcgcgacaattgggacaccgtcaaggcattcgccaaggcgattgcccagttcatgacc
gcgcaattgccggagcgttttaccgcaacgtcagggcccaaaaaccgtgtcggcaagatc
tttatcgactacctgcgcaatgctcgaggcgccagtaccgtggcagcctactccgtgcgt
gcgcggcctggattgccggtgtcggtgccggtcagtcgtgaggaattgaagggcttgcgt
ggtgcccagcaatggacggtcgtcaacgtgcatgagcgtttaaaggcgttgaaggttgat
ccctgggacgggtatgccaatcgccagaaaatcagcaagaagatgtgggataagctgggc
gcccatccgccgccgtga
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