KEGG   Pseudomonas tritici: HU722_0014050
Entry
HU722_0014050     CDS       T07594                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ptrt  Pseudomonas tritici
Pathway
ptrt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ptrt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU722_0014050 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptrt03400]
    HU722_0014050 (ligD)
Enzymes [BR:ptrt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU722_0014050 (ligD)
DNA repair and recombination proteins [BR:ptrt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU722_0014050 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QXH81177
UniProt: A0A8F4WRS7
LinkDB
Position
complement(3155821..3158298)
AA seq 825 aa
MPKPLSDYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGNIPAGQYGAGDVIVWDRGVWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDAQARPADDYDIVQAQPN
SVLSNASVGKPNAKAKPKPKPQKTLATLPEQFAPQLATLVDRAPEGDWHYEIKFDGYRML
ARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLNGQDQRQAPVEERRAALKAALAGSRSKLLRFSEAFTAHHRD
IFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQASLKSIYAQLTPLECSTSPLEKPLTSAQARGVHWVQPTL
VGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKTAKKNSGNVNITHPDR
VIDKQTGTQKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNI
KQLDQALDPGHARLMEIDSAAALIGAVQMGTVEFHTWGGTTDKIETPDLFVLDLDPDPAL
PWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDNWDTVKAFAKAIAQFMT
AQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLR
GAQQWTVVNVHERLKALKVDPWDGYANRQKISKKMWDKLGAHPPP
NT seq 2478 nt   +upstreamnt  +downstreamnt
atgccaaagcccctcagcgactacaaccgcaagcgcgacttcgggattaccgccgaaccg
gcaggcagtgcgcccgccggcaaacggaaggcctcggcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcactatgacttccgcctggagcttgatggcgtgttgctcagt
tgggcggtacccaaaggcccgagcctggacccgagccagaaacgcctggccgtccacgtt
gaagatcaccccctcggctatggcagcttcgaaggcaatattccggcgggtcagtacggc
gcaggcgacgttatcgtgtgggaccgcggcgtgtggcaaccccatgacgacccgcacaag
gcctacgccgccggcaagctcaaattcaccttggttggcgagaagctctcaggcgactgg
accctggtgcgcacccgcctgaagggcagcggcgataaacaacaatggctgctgatcaag
gaaaaggacgcacaggcacgccctgccgatgactacgatattgtccaggcccaaccgaac
agcgtgctcagcaacgcctcggtcggcaaacccaacgctaaagccaaacccaagcccaag
ccgcaaaaaaccttagccaccctccccgagcaattcgccccgcaattggccacgctggtg
gaccgcgcgccagaaggcgactggcattacgaaatcaagttcgacggttaccgcatgctc
gcgcgcattcgtgacggcgaggtacgcctgttcacccgcaatggccatgactggaccgaa
cgcctgccccgtcaagccaaggccctgcaagcgctgaaactcaaggacagctggctcgac
ggtgaggtggtcagcctaaacggcgacggcctgccggacttccaggcgctgcaaaacgcg
tttgatattgggcgcagcctggacattgtctactacctgttcgatgcgccgttcctcaat
ggccaggaccaacgccaggcgcctgtcgaggagcgccgcgcagccctcaaggccgcgctg
gccggtagtcgaagcaagttgctgcgcttctccgaagcgttcactgcgcaccatcgtgac
atctttgaaagcgcatgcgacctggccctggaaggcgtgatcggtaaacgcctgggcagc
ccctacgtgtcgagtcgcagtgccgattggatcaagctcaaatgccgcttgcgccaagag
tttgtgattgttggctacacccggccgcagggctcacgcagtggtttcggggcgctgttg
ctggcggtgaatgatgattccgggctggtgtacgccgggcgggtgggcacaggctttgat
caggcgtcgctgaagtcgatctacgcgcaacttacgccattggagtgcagcacgtccccc
ctggaaaaaccgctgaccagcgcccaggcccgcggtgtgcattgggtgcagccgacgctg
gttggcgaggtgcaatttgccgaatggacccgggaaggcgtggttcgccaggccgcgttc
gtcggcatgcggaccgataaaccggctgcgcagatcattcatgagcaaccgcgcacggcc
aaatccatgaaaaccgcaaaaaaaaacagcggcaacgtgaacatcacccatcccgaccgc
gtaatcgataagcaaaccggtacgcaaaaacagcaactggcgcagttctacgacagcatc
agccaatggattctgcccttcctgcggcaccgtccggtttcgctgctcagagcgcctgag
ggcattgaaggcgagcagttcttccagaagcattccgagcggctcgcgattcctaacatc
aagcaactggatcaggcgctcgaccctggtcatgcacgcctgatggaaatcgacagcgcc
gctgcattgatcggtgcggtgcaaatgggcaccgtggagttccacacttggggcggcacc
accgacaagatcgaaaccccggacctgtttgtgctcgatctcgaccccgacccggcactg
ccttggaaagccatgttggaagcggcgcagctcacgctgtcggtgcttgacgaattgggg
ctgcaagcgttcgtcaagaccagcggtggcaagggcctgcacctggtcgtgccactggcg
cggcgcgacaattgggacaccgtcaaggcattcgccaaggcgattgcccagttcatgacc
gcgcaattgccggagcgttttaccgcaacgtcagggcccaaaaaccgtgtcggcaagatc
tttatcgactacctgcgcaatgctcgaggcgccagtaccgtggcagcctactccgtgcgt
gcgcggcctggattgccggtgtcggtgccggtcagtcgtgaggaattgaagggcttgcgt
ggtgcccagcaatggacggtcgtcaacgtgcatgagcgtttaaaggcgttgaaggttgat
ccctgggacgggtatgccaatcgccagaaaatcagcaagaagatgtgggataagctgggc
gcccatccgccgccgtga

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