Portunus trituberculatus (swimming crab): 123506064
Help
Entry
123506064 CDS
T07853
Name
(RefSeq) LOW QUALITY PROTEIN: alpha-protein kinase 1-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123506064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptru03000
]
123506064
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123506064
04121 Ubiquitin system [BR:
ptru04121
]
123506064
Enzymes [BR:
ptru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123506064
Transcription factors [BR:
ptru03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
123506064
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123506064
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123506064
Ubiquitin system [BR:
ptru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123506064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
TFIIA
DDHD
zf-UDP
Motif
Other DBs
NCBI-GeneID:
123506064
NCBI-ProteinID:
XP_045113849
LinkDB
All DBs
Position
19:complement(8381..57932)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSVLNISEDMVECPLCMEPLEMDDLNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAYP
ENPADFKPLSHEDLQRIKQEKRQKDAQRKQKVTENRKHLANVRVVQKNLVFVVGLSARLA
DAETLKKQDYFGKFGKIHKVVINHSTSYAGSQGPSASAYVTYQRAEDTLRAIQAVNNIHV
DGRTLKASLGTTKYCSHFMKNQPCPKPDCMYLHELGDESASFTKEEMQQGKHQEFEKKLQ
DLYLGNPANSTNEKNNTPAPPTQANSSGSGNSSKKGSSGGGKENSAPKMLQDTHTSAPST
GEAWPCLATATKEGKKSKSSRADRSNGSARHTPTDEHNNNNNSNNNNNNNNIVSKRGSKE
RERSGNTSSSSSSSNISTNGISSSSSSSSSNGLGVDMMSHSVSPVATSSPSSGQESCTSS
ASTTPPPSFDGAIISSSPPCSSPVPVSCVQGLCQDESSPLPTPPSSLSSSSEPSSSLSLP
QQFSRSAATVSLFSDNNNSFFSSGPALPLQRTSPPLPSASTSPHQQQQQQNNNNNNTQQQ
QQQQQQQQQQYHHHHHQQQQQQQQHHPHHHNLHHQQQQQQQQQQQQQQQQQQPKQPNQQQ
QQQNQQQPQQQQQQTLQQPAQPSLHSNPVSSSHQHTRGSTPDWSNKPSEIFDMDSAFPSQ
GHTNGTWNSIFDFEKSEDLPLSSNFVDDELGFDPFEETNKALAEDIKIEQKQQQLRNQHQ
INHHHHHHHHHHHHSQLQSQHQQHQQQALRTGTKSLMDYSSSGQSRPRLPPPGFNGLSSF
NSYGMPKQSQPEHSKLLPPFLSGLPSNPSLGTPGIGSGPSVPSPMNGMVGSSGLGVPPGL
GGNLLGSNNSGGLGSGGLPQHLLTPASLLSLDTPLSASQGPPGIGLPKGDAFLLKDLENG
LRSILPTISSVSTMNTLNTVNTLNSLAGGANNQTSQNNPLTNFLNMAHQHQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPSQQSLLHQLTMSSLANSHKVRMLKMLS
LADKMTVIQDHEKGWSNTGAPDLTVLDPAIVSSGQLTDSRSDSPPHWMKTMEQLTEAGPH
PLWNNLIPYNLTSSGLPTGLGPHTGQSGPAAPTQRSVAPMWPPTSPPPGFNSLSPLHHPK
QHEPHKIENL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgctaaacataagtgaggacatggtggaatgccccctttgtatggaacctcta
gagatggatgacttgaatttcttcccctgcacatgtggctatcaaatatgtcgattctgc
tggcaccggattcggacagatgaaaatggcctctgtccagcttgtcggaaggcatacccg
gagaaccctgcagacttcaagcctttgtcgcatgaagacctacagcgaataaagcaagaa
aaacggcagaaggatgcacagcgtaaacagaaggtaacagagaaccggaagcatttggcc
aacgtgcgagtagttcaaaagaatctagtgtttgtggtgggtctgtcggcacggttagct
gatgctgagactttaaaaaagcaggactactttggaaaatttgggaaaatacacaaagtg
gtaataaatcacagcaccagctatgctggatctcaggggccgagtgcatcagcatatgtg
acttatcagcgagcagaggacaccttgagagccatccaggcggtaaacaacatccatgtt
gatggccgaaccttgaaagcctctctgggtaccactaaatattgctcccattttatgaag
aatcagccatgtcctaagccagactgcatgtaccttcatgaattaggagatgaatcagct
agttttacaaaagaagaaatgcagcaagggaaacatcaggagtttgaaaagaagcttcag
gacttatacttaggaaatccagcaaattcaacaaacgaaaagaataatactcctgcacca
ccaacacaagccaatagctcaggaagtggaaattccagtaaaaaaggctcatcaggaggg
ggtaaggagaacagtgcccccaaaatgttgcaggacacccacacttcagctccaagcaca
ggagaggcctggccttgcctagcaacagctacgaaggaaggaaaaaagtctaaatctagc
agagcagacagaagcaatggctcagcaaggcacaccccaacagatgaacataataataat
aacaatagtaataataataataataacaacaacatcgtcagtaaaagggggagtaaagaa
agagaaagatcaggcaatacgagtagtagcagcagtagtagtaatatcagcacaaatggt
atcagcagcagcagcagcagcagcagcagtaatggacttggggttgacatgatgagtcac
agtgttagccctgtggccacttcttcaccatcttcaggccaagaaagctgcacatcctcc
gcctccaccactcctcctccatcatttgatggtgccattatctcctcctcccctccatgt
tcttctcctgtgccagtgtcatgtgtgcaggggctgtgccaagacgagtcctctcccttg
cccactcctccttcctccctctcctcctcctcggaaccttcctcctcactctccttacca
cagcagttctcccgttcagctgctactgtttccttgttctcagacaacaacaacagtttt
ttctcatctgggccagcgcttcctcttcagcgaacatcacctccccttccttcagcctca
acctctcctcatcagcagcagcagcagcagaacaacaacaacaacaacacacagcagcag
cagcagcagcagcagcagcagcagcagcagtaccaccaccaccaccaccaacaacaacaa
caacaacaacaacaccacccccaccaccacaatctccaccatcaacagcaacaacagcag
cagcaacaacaacaacaacaacagcaacaacaacagccaaagcagccaaatcaacagcag
cagcaacaaaatcaacagcagccacagcaacaacagcagcagacactacagcaaccagcc
cagccatcattacacagcaatcctgttagcagcagccaccagcacactcgtgggagtaca
ccagattggagcaacaagccatcagaaatctttgatatggacagtgcatttccctctcag
ggtcacacgaatggtacttggaacagtatattcgattttgagaaaagtgaagaccttcca
cttagcagtaattttgtagatgatgagttaggttttgatccatttgaggagactaacaaa
gctttggcagaagatatcaagatagaacagaagcaacagcagctccgaaaccagcaccaa
ataaatcaccaccaccaccaccaccaccaccaccaccaccacagtcaattacagtctcag
catcagcagcatcagcagcaggcactgagaacaggcaccaagtcactgatggactattct
tctagtggtcagtccagacctaggttacctcctcccggttttaatggtctgagtagcttt
aattcctatgggatgcctaaacaaagtcagcctgagcacagtaagctgctcccacctttt
ctcagtgggttgcccagcaatccttccctaggcactccaggcattggctctggcccctct
gttccttcaccaatgaatggcatggtaggatccagtggcttaggtgttcctccaggtctg
ggtggaaacctgttgggcagcaataactcaggtgggctaggaagtggtggcttgcctcaa
cacctgctcactcctgcctcccttctgagcttggacacacctctcagtgcctctcaaggt
ccaccaggtattggacttcccaaaggtgatgcattcctcctcaaagatttagagaacggt
ttgcgcagcatcctgcccaccattagctcggtcagcactatgaacactctcaacacagtg
aacacccttaactccctcgcaggcggggcaaataaccaaacttcacaaaacaatcctctt
acaaatttcttgaatatggctcaccagcaccaacaacaacagcaacagcagcagcagcag
cagcaacaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaa
caacaacaacaacagcaacagcaacaacaacaacatccttctcagcagtccctccttcat
caacttacgatgagctctctagcaaactctcacaaagttaggatgctgaagatgctgtct
ttggcagacaaaatgactgttatacaggaccatgagaaaggttggagtaacactggtgcc
ccagatctgacagtactcgacccagcaattgtatcttcaggacaactgactgactctcgc
tcagattctcctcctcactggatgaaaacaatggagcagctcacagaggcaggtcctcat
cccctctggaacaacttaatcccttacaaccttacttcctctggcttgccaactggtttg
ggtccccacacaggccagtcgggtcctgcggctcccacacagcgctccgtggctcccatg
tggcccccaacctctccaccaccaggcttcaactccctctcccctctacaccaccccaaa
cagcacgaaccacacaagatcgagaatctctaa
DBGET
integrated database retrieval system
