Portunus trituberculatus (swimming crab): 123516212
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Entry
123516212 CDS
T07853
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru04120
Ubiquitin mediated proteolysis
ptru04137
Mitophagy - animal
ptru04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123516212
04120 Ubiquitin mediated proteolysis
123516212
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
123516212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptru04131
]
123516212
04121 Ubiquitin system [BR:
ptru04121
]
123516212
03029 Mitochondrial biogenesis [BR:
ptru03029
]
123516212
Enzymes [BR:
ptru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
123516212
Membrane trafficking [BR:
ptru04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
123516212
Aggrephagy
Other aggrephagy associated proteins
123516212
Xenophagy
Other xenophagy associated proteins
123516212
Ubiquitin system [BR:
ptru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
123516212
Mitochondrial biogenesis [BR:
ptru03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
123516212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
123516212
NCBI-ProteinID:
XP_045131353
LinkDB
All DBs
Position
40:20322915..20338869
Genome browser
AA seq
539 aa
AA seq
DB search
MLQYLFNLFGGLWHIILTMFGLGQAKPAVSTELEVFVRTNTGEKVSVCLDPSWTVQQIKT
TLAPKLKRNSHDIRIIFAGKELPDNMVIQQCDLGNHSFLHAVIVVAKEDGAANSTLDSAR
KGATISHINEISNSTSSPVVENKIETSKEIEHKPHCSTNEVSEECGMETTEIKNCQDFPS
IKTATLLCDASTVMMIQLTEAELKAINELKSVDGSSERPHFYVYCSKPCNSVQVGKLRVR
CALCKQGTLTLHRDPCNWQDVLKEGQISGTCETVGCNGSVAEFFFKCRAHETSGEDDSSV
ALYLVRANLPAIPCLACTEVSSPVIVFECKDAHVMCLDCFVTYCVSRLNERQFTGNHEIG
YTLPCPIGCQDSLIREVHHFKLMGDNNYERYQRWGAEEAVLAAGGVLCPYPGCGQGIIAD
EDCRRVVCVGGCGYVFCKLCLQGYHIGECEPEGGGGPNFVGGSGTFAVDPSRAAGSRWDE
ASSLAIRVTTKPCPKCRTPTERDGGCMHMVCTRSSCNFHWCWVCQTEWTRECMGAHWFG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgctccaatatctctttaatttgtttggagggctctggcacatcatcctgacaatgttt
ggccttggccaagccaagcctgctgtgtccactgaactagaagtctttgtcaggaccaac
actggagagaaggtgtcagtctgccttgatccatcatggacagtacaacaaataaagact
actctggcacccaaactaaaacgcaacagtcatgatattagaataatctttgctggtaaa
gagctacctgacaacatggtcatccagcaatgtgatcttggaaaccatagttttcttcat
gctgtaatagtggtagcaaaagaggatggagctgctaattctaccttggattcagccaga
aagggtgctacaataagtcacataaatgaaatttcaaactcaaccagttctccagttgtt
gaaaataaaatagaaacaagtaaagaaatagaacataaacctcattgctcaactaatgaa
gtgtctgaagagtgtggtatggaaaccactgaaattaaaaactgtcaagatttcccatca
atcaagactgccacgttgctgtgtgatgcatccactgtcatgatgattcagctgactgaa
gcagaactgaaggctattaatgaacttaaatcagtggatggaagcagtgagcgcccacac
ttctatgtatattgcagtaagccatgcaactcagtgcaggtgggaaagttgcgtgtcagg
tgtgcactttgcaagcagggcacgctgacactgcaccgggatccctgcaactggcaagat
gttctcaaagagggacagatttctggtacatgtgaaactgttggctgtaatggaagtgtg
gccgagttcttctttaagtgtagagctcatgagaccagtggtgaagatgacagttcagtg
gctctttatcttgttcgggccaacctgcctgccatcccttgcctggcttgcacagaagtt
tcttctccagttatagtgtttgaatgtaaagatgcacatgtaatgtgtcttgattgcttt
gtcacatactgtgtttctagattgaatgaaaggcagtttacaggaaatcatgaaatagga
tataccttgccctgtcctattggctgtcaagattcactcattcgtgaagtacatcacttc
aagttgatgggagacaataactatgaacgttaccagcgatggggggcagaagaagcagta
ctggcagcggggggagtgctgtgtccgtatcctgggtgtgggcaaggtatcattgctgat
gaagactgtcgcagagtagtctgtgtgggtgggtgtggctatgtattctgcaaactttgc
ttacaaggatatcacatcggagaatgtgagccagagggtggaggtgggccaaattttgtt
ggaggcagtggaacatttgctgtggatcctagcagggcagctggttctcgatgggatgaa
gcatcttctctggccattcgtgtcaccaccaaaccctgtcctaaatgccgcacaccaaca
gagcgcgatggaggatgcatgcacatggtgtgcacccgcagctcctgcaactttcattgg
tgctgggtgtgtcagactgagtggacacgggagtgcatgggagctcactggtttggttga
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