Portunus trituberculatus (swimming crab): 123516271
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Entry
123516271 CDS
T07853
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03022
Basal transcription factors
ptru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123516271
09124 Replication and repair
03420 Nucleotide excision repair
123516271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptru03021
]
123516271
03400 DNA repair and recombination proteins [BR:
ptru03400
]
123516271
Transcription machinery [BR:
ptru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123516271
DNA repair and recombination proteins [BR:
ptru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123516271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
FYVE
C1_2
zf-B_box
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
123516271
NCBI-ProteinID:
XP_045131464
LinkDB
All DBs
Position
40:25319885..25332024
Genome browser
AA seq
394 aa
AA seq
DB search
MQEEEDPKEYRWESGYEKTWETIQEDESGRLEPSVTEIIQRTKRRKLLDREASVRLGIMR
HVYIILDYSQAMTEQDLKPTRQICTLKILEDFIKEFHDQNPISQLGIITTQNKVAKRNSD
LSNNPQRHLDCIKKLQDVPCRGEPSLQNALEVALSSLRHLPPHTSREILIIYAALTTCDP
GEIIATLQKVQEANIRVSVVGLAAELHVCKDITKNTGGSFSVSINDLHLKELVNEHLEPP
PASNKMDHTLIKVGFPHQINADAKPALCMCHLDDLPPLNTRGYYCPQCTAKYCDLPAECR
VCGLMLVTAPHLARSYRHLFPLRHFNEILAEESSAKECYGCQKQFTATAADKNVYVCRTC
QQVFCFNCDIFLHETVHSCPGCASNPTISQYTNT
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagaggaagatccaaaggaatatcgttgggagagcggctacgagaaaacatgg
gagacgatacaggaagacgaatctggccgcctggagccgtcagtgacagagataatccag
cggacaaaacggcgcaagttgctggacagagaggcgagtgtgcgccttggaatcatgagg
catgtgtacattatcctggactactcacaggccatgacggagcaagacctcaaacccaca
cgtcagatttgcacactaaagattctagaggatttcatcaaggagtttcatgaccagaac
ccaataagccaattaggtattatcacaactcaaaataaggttgccaagaggaacagtgat
ctcagcaataacccgcaacgccaccttgactgtatcaagaaattacaagatgttccatgc
cgtggagagccatcactacaaaatgcattagaggtggccctctcctctctacgacatctt
cctcctcatacttcaagagagatcctgattatctatgctgcattgacaacctgtgaccca
ggagaaatcattgccaccttacaaaaagtacaggaagctaacatccgagtgtcagtggtg
ggcttggctgcagaactccatgtgtgtaaggatatcactaaaaacactggtgggtccttc
tctgtttccatcaatgacctccaccttaaggaacttgttaatgaacacctggaacctccc
ccagcctctaataagatggaccacaccctcattaaggttggcttcccacatcagattaat
gctgatgccaagcctgccctctgcatgtgccacctggatgatcttccaccgctcaatact
cgtggttactactgtccacagtgcactgccaagtactgtgacctgccagctgagtgccgt
gtgtgtggcctcatgttggtcactgcgcctcatcttgctcgctcttacaggcacctattc
cccctgagacattttaatgagatacttgcagaggagagttctgctaaggagtgctatgga
tgtcaaaagcaattcactgcaactgctgctgataaaaatgtatatgtgtgcaggacatgc
cagcaagtgttctgttttaactgtgacatcttcctgcatgaaacagtccactcatgtccg
ggctgtgcctcgaacccaaccatttcacagtacactaacacctga
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