Portunus trituberculatus (swimming crab): 123520689
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Entry
123520689 CDS
T07853
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123520689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptru03400
]
123520689
Enzymes [BR:
ptru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123520689
DNA repair and recombination proteins [BR:
ptru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
123520689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
123520689
NCBI-ProteinID:
XP_045139145
LinkDB
All DBs
Position
7:3083524..3120586
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AA seq
884 aa
AA seq
DB search
MSMPPLASIIPWEQVCRMLEKVHGEKRPKKKEMLLKFITHFRELHHKKLQHQPDCPDTFF
PVMRVLLPGLDRARGAYGVKERRLADLYIRILGLRKDGNDAQKLINFRKPKATAGGESGD
FAEVAYYVLRSRCLSGGKLSLLEVDQHLTSIAENHAAKNHEAVERSLLVMLNGMSAKEQK
WLLRVLLKDMRLGLGQTAIFAAWHPDAKDYYDVTNSLEKVCKTLQDPSVRLHEVDVSLFC
PFRPMLAQRAVLEKVESQMNHKSYFAETKFDGERSQIHKKGGDYKYFSRNGFDFTTNFGA
DRHSGLFTPHLHPQLAPHVRDVILDGEMVGWSRNRRCIVTKGELMDVKHLKEEGDWQVCF
CAFDIIYLNGKVLTNQSLEERLGVLRSVVIPLEGRVVISATTKVRTREEVVAALNEAIDR
REEGVVLKDPDSVYQPASRRAGWIKVKPEYVDSLVPELDLVIIGGFYGKGTHHGALSHFL
LGVAVPAEEPGGKPRLFHSFTRVGSGYTVDELQELVDKLKPHTRVRQPSSVCVGREKVPD
VWIEPCKSFVVQVRAAEVVKSDLYRTGVTLRFPRVERVRYDKPWHQALTTTELRQLVQEA
SGKLAVKHYGDDVDGGKGTKRKAVARMEGPSLPPHFRPADVSSTVKKDEIFASLEMCVMS
GDEEMSKQALEIMVKEHGGSLTQHPGPNTHCIVANTPTVRVQNYIASSKHNVVLPSWVVA
SCSSGRLLPWGPLDILHLREKERSVMQDLFDEFGDSYTEPTDGKTLRRVMIKMKKECWRV
LSEDEMSAMDEKLCDSGDLRALFRRVTACLCGGEVDRLAGLTLRLHGGLLTDSPCSATHL
IVPEESDMRAHELAGRHLVTADWVYASVERGKRLEERLYMPRLV
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgcccccattggcctcgatcatcccctgggagcaggtgtgtcgcatgctggaa
aaggtacatggggagaaacggccaaagaaaaaagaaatgctgctcaaatttatcactcac
ttccgggaacttcatcacaagaaattacagcatcagcccgattgtccagacactttcttc
cctgtgatgcgagtgttgctgccggggctggacagggcaagaggtgcctatggggtgaag
gaacgcaggctggctgacttgtatatacgcattcttggtttgaggaaagatgggaatgat
gcacagaagcttataaatttcaggaaacccaaggcaacagcggggggtgagtcgggagat
tttgctgaggttgcctactatgtgttgaggagcaggtgtctcagtggggggaagctgagc
ctgctagaagtcgaccagcacctcacctctatcgccgagaaccatgctgcaaagaaccat
gaggcagtggagcgttctctgctggtgatgctcaatggaatgtcagccaaggaacagaag
tggctgctgcgtgttctgctgaaggacatgagactcgggttggggcagacggccatcttt
gcagcgtggcaccccgatgctaaggattactatgacgtcaccaatagtctagagaaggtc
tgcaaaacactccaagacccttccgttcgtctgcatgaggtggacgtgtcgctgttctgc
ccattccgccccatgttagctcagcgggcagtgctggagaaggtggagtcacagatgaat
cacaagtcctattttgcagagacgaagtttgatggagagcggtcccagattcacaagaaa
ggcggagattacaaatacttctcaagaaacggctttgatttcaccacaaactttggcgcg
gaccgacacagtggcctgttcaccccgcacctccacccccagctggccccacatgttaga
gacgtgatcctggacggggagatggtcggctggagcaggaaccgtcgctgcatcgttacc
aagggtgaactaatggacgtgaagcacctgaaggaggaaggtgattggcaggtgtgcttc
tgtgccttcgacatcatctatctcaatggcaaggtcctgacaaaccagtccctggaggag
cgactgggggttctgaggtcagtggtcatccctctagaaggtcgggtcgtcatctctgcc
accactaaggtcaggacaagggaggaggtggtggctgccctgaatgaagcaatagacagg
cgtgaggagggtgtggtgctaaaggacccagacagtgtgtaccagcctgcctcccgaaga
gctggctggattaaagtgaagcctgagtatgtcgactcactagtgccagagctggacctg
gtgataattggagggttctatggcaaggggacccaccatggtgccctctctcacttcctc
ctgggtgtcgctgtgcctgcagaggaacctgggggaaagccaagactcttccactccttc
actcgtgtgggatctggctacactgtggatgagctgcaagagttggtggataaactgaag
ccacacactcgcgtccgccagccgtccagtgtgtgtgtgggacgggagaaagttccggat
gtgtggatagaaccttgtaaatctttcgttgtacaggtgagggcagcggaggtggtgaag
agcgacctataccgaacgggggtgacactgaggttcccgagggtggagagggtgcgttat
gataagccatggcaccaggcactcaccaccactgaactcaggcagcttgtgcaggaggcg
agtggcaagctggcagtgaaacactatggcgacgacgtggatggaggaaagggcaccaag
aggaaggcagtggctaggatggagggcccgtctctgcccccacacttccgcccagccgat
gtctcctccactgtcaagaaagatgaaatatttgcgtcgctggagatgtgtgtgatgagt
ggagatgaggagatgagcaagcaggcgctggagataatggtgaaagaacatggaggtagt
ctcactcagcacccaggcccaaacactcactgcatcgtggcaaacacaccaacagtgaga
gttcaaaactacatcgcatcttctaaacacaacgtggtgctgccttcctgggtggtggcg
tcttgctccagtggccgcctgctgccctggggacctctggatattctgcacctgagggag
aaggagagaagtgtcatgcaagacctgtttgatgagtttggggacagctacactgagcca
accgatgggaagactctcagaagggtgatgatcaagatgaagaaagagtgttggcgtgta
ttgtctgaggatgagatgagtgcgatggatgagaagctgtgtgactctggggacctgagg
gctctcttccggagggtcactgcctgcctgtgtggtggtgaggtggacaggctggcagga
ctcaccctcaggctccatggcgggctgctgactgactcgccctgctcagcgactcacctc
attgttccggaggagagcgatatgagagcacacgaactggcaggaaggcatttggtgacg
gctgactgggtctatgcaagtgtggagcgaggcaagagactggaggagagactgtatatg
ccaagactggtgtga
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