Pseudomonas trivialis: AA957_01010
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Entry
AA957_01010 CDS
T04006
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptv
Pseudomonas trivialis
Pathway
ptv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AA957_01010 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptv03400
]
AA957_01010 (ligD)
Enzymes [BR:
ptv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AA957_01010 (ligD)
DNA repair and recombination proteins [BR:
ptv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AA957_01010 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKS04751
UniProt:
A0A0H5A1V7
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All DBs
Position
223767..226244
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AA seq
825 aa
AA seq
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MPKPLSDYNRKRDFGITAEPAGSAPAGKREASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGNIPAGQYGAGDVIVWDRGVWQPHDDPRK
AYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDPQARPADDYDIVQAQPN
SVLSNASVGKPKAKAKPKPKPKKAVATLPEQFSPQLATLVDRAPEGDWHYEIKFDGYRML
ARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLNGQDQREAPVEDRRAALKAALAGSRSKLLRFSEAFTAHHRD
IFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQASLKSIYAQLTPLERGTSPLEKPLTSAQARGVHWVQPTL
VGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKTAKKPSGHVNITHPDR
VIDKQSGTQKQQLAQFYDSISEWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNI
KQLDQALDPGHARLMEIDSAAALIGAVQMGTVEFHTWGGTTDKIETPDLFVLDLDPDPAL
PWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDNWDTVKAFAKAIAQFMT
AQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLR
GAQQWTVANVHERLKALEVDPWAGYANRQKISKKMWDKLGTHPPQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcccctcagcgactacaaccgcaaacgcgacttcgggattaccgccgaaccg
gcaggcagtgcgcccgccggcaagcgcgaagcctcggcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcactatgacttccgccttgagcttgatggcgtgttgctcagt
tgggcggtgcccaaaggcccgagcctggaccccagccagaaacgcctggccgtccacgtt
gaagatcaccccctcggctatggcagcttcgaaggcaatattccggcaggtcagtacggc
gcaggcgacgtgatcgtgtgggaccgcggggtgtggcaaccccatgacgacccgcgcaag
gcctacgccgccggcaagctcaaattcaccttggttggcgagaaactctcaggcgactgg
accctggtgcgcacgcgcctgaagggcagcggtgataaacaacaatggctgctgatcaag
gaaaaggacccacaggcacgccctgccgatgactacgatattgtccaggcccagccgaac
agcgtgctcagcaacgcctcggtcggcaaacccaaagcaaaagccaagcccaagcccaag
ccgaaaaaagctgtagccaccctccccgagcaattttccccgcaattggccacgctggtg
gaccgcgcgccagaaggcgactggcattacgaaatcaagttcgacggttaccgcatgctc
gcgcgcattcgtgacggcgaggtacgcctgttcacgcgcaacggccatgactggaccgaa
cgcctgccccgtcaggccaaggcactgcaggcgctgaaactcaaggacagctggctcgac
ggcgaggtggtcagcctcaacggcgacggcctgccggacttccaggcgctgcaaaacgcg
tttgatatcgggcgcagcctggacattgtctactacctgttcgatgcgccgttcctcaat
ggccaggaccaacgcgaggcgcctgtcgaggatcgccgcgctgccctcaaagccgcgttg
gccggcagtcgtagcaagttgctgcgtttctccgaagcattcactgcgcaccatcgcgac
atctttgaaagcgcctgcgacctggcgctggaaggcgtgatcggtaaacgcctgggcagc
ccctacgtgtcgagtcgcagtgccgattggatcaagctcaaatgccgcttgcgccaggag
ttcgtgattgtcggctacacccggccgcagggctcacgcagtggtttcggggcgctgctg
ctggcggtgaatgatgattccgggctggtgtacgccgggcgtgtgggcacaggctttgat
caggcgtcgctgaagtcgatctacgcgcaacttacgcccctggaacgcggcacgtccccc
ctggaaaaaccgctgaccagcgcccaggcccgcggcgtgcattgggtgcagccgacactg
gtaggcgaggtgcaattcgccgaatggacccgggaaggcgtggttcgccaggccgcgttt
gtcggcatgcgtactgacaaacccgctgcgcagatcattcatgagcaaccgcgcacggcc
aaatccatgaaaaccgcgaaaaaacccagcggccacgtgaacatcacccatcccgaccgc
gtaatcgataagcaaagcggtacgcaaaaacagcaactggcgcagttctacgacagcatc
agcgaatggattctgcccttcctgcgtcaccggccggtttcgctgctgagagcgcctgaa
ggcattgaaggcgaacagttcttccaaaagcattccgagcggctcgccattcctaacatc
aagcaactggaccaggcgctcgaccctggccatgcacgcctgatggaaatcgacagcgcc
gccgcattaatcggtgccgtacaaatgggcaccgtggaattccacacctggggcggcacc
accgacaagatcgaaaccccggacctgtttgtgctcgatctcgacccggacccggcactg
ccttggaaagccatgctggaagcggcgcaactcacgctgtcggtgctcgacgaactgggg
ctgcaagcgttcgtcaagaccagcggtggcaagggcctgcacctggtcgtgccactggcg
cggcgagacaattgggacaccgtcaaggcattcgcaaaggccattgcccagttcatgacc
gcgcaattgccggagcgttttactgcaacgtcagggcccaaaaaccgtgtcggcaagatc
tttatcgactacctgcgcaatgcacgaggcgccagtaccgtggcggcctactccgtgcgc
gcacggccgggattgccggtgtcggtgccggtcagtcgtgaggagttgaagggtttgcgt
ggtgcccagcaatggacggtcgccaacgtgcatgagcgtttaaaggcgttggaggttgat
ccctgggccgggtatgccaatcgccaaaaaatcagcaagaagatgtgggataaattgggc
acccatccaccgcagtga
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