Pseudomonas tohonis: TUM18999_27200
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Entry
TUM18999_27200 CDS
T07887
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TUM18999_27200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_27200
Enzymes [BR:
ptw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TUM18999_27200
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TUM18999_27200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCG24529
UniProt:
A0A6J4E5G7
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All DBs
Position
2971047..2973608
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AA seq
853 aa
AA seq
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MARRSSDYNRKRNFDITSEPREEARPRGRNKAGALGFVIQKHDARHLHYDFRLELDGTLK
SWAVPKGPSLDPKDKRLAVHVEDHPLGYADFEGSIPAGQYGAGDVIVWDRGIWQPHGDPR
AAYEAGRLTFTLVGEKLSGDWSLVRTRLRGSGDKEQWLLIKQDDEVARPAEEYDIVSAEP
ASVLSGADVGSDAPVARPGATRRAAKAGGKARKAAASEERMPDSLAPQLATLVDAPPAGD
WHYEIKFDGYRILARIRDGEVRLFTRNGNDWTARLPLQARDLAALELGDSWLDGEVVVLD
EDGLPSFQGLQNAFDIGRSHSILYYLFDAPFLDGRDQRQLPLEERRAALEKVLKGQRRSL
LRFSEAFSASHESILESACSMSLEGVIGKRAGSPYRSARSPDWIKLKCRRRQEFVIVGYT
APKGSRSGFGALLLAVHDEPGGDELRYAGRVGTGFDEARLADIHGRLQAIARDDSPLTRA
LPAAQRRGVHWVEPQLVAEVEFAEWTGDAIVRQAAFVALRSDKPAEQIVREQPRSVAKPK
KAPEPATEKGGEGGRQTLAKVSISHPQRVIDDQSGTQKLELARYYADVAEWVLPHLKGRP
VSLLRAPEGVGGELFFQKHAERLAIPNIRHLDPELDPGHARLMEIDTLEALVGAVQMGAI
ELHTWGATSDRIERPDRLVLDLDPDPKLPWKTMQEATRLTLSVLDELGLQAWLKTSGGKG
MHLIVPLARHAGWDEVKGFGKAIASFLARQLPERFVDKMGPKNRVGRIFVDYLRNQRGAS
TVCAYSVRARPGLPVSVPIERDELERLKGSAQWTLATLRQRLDGLERDPWHDYLARQRIT
RAMWDRLEAEPED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcccgccgttccagcgactacaaccgcaagcgcaatttcgacatcacctccgaacct
cgcgaagaggctcggccccgtgggcgcaacaaggccggcgccctcggcttcgtgatccag
aagcatgacgcccgccacctgcactacgacttccgcctcgagctggacggcaccctgaag
agctgggcggtgcccaagggcccgagcctcgaccccaaggacaagcgcctggccgtgcat
gtcgaggaccacccgctgggctatgccgatttcgagggcagcattcccgccgggcagtac
ggcgcgggggatgtgatcgtctgggatcgcggcatctggcagccccatggcgaccccagg
gccgcatacgaggccggtcggctgacgttcaccctggtgggcgagaagctcagcggcgac
tggagcctggtgcgcacccgcctgcgcggcagcggcgacaaggagcagtggctgctgatc
aagcaggacgacgaggtggcgcgcccggcggaggagtacgacatcgtttccgccgagccg
gccagcgtgctcagcggcgccgatgtcggcagcgacgcaccggtcgcccggccgggtgcc
acccggcgcgccgcgaaggctggcggcaaggcacgcaaggctgcggcgagcgaggagcgc
atgcccgacagcctggcgccgcaactggcgacgctggtggatgcgccgccggcgggtgac
tggcactacgagatcaagttcgacggctatcgcatcctcgcccgcatccgcgacggcgag
gtgcggctgttcacccgcaacggcaacgactggaccgcgcgcctgcccctgcaggcccgc
gacctggcggcgctggagctgggcgacagctggctggatggcgaggtggtggtgctcgac
gaggacggcctgccgagcttccagggcctgcagaacgccttcgatatcggccgcagccac
agcattctctattacctgttcgatgcccccttcctcgatggccgtgaccagcgccagctg
ccgctggaggagcgccgtgccgccctggagaaggtgctcaagggccagcggcgcagcctg
ctgcgcttctccgaagccttttccgccagccacgaatcgatcctggagagtgcctgttcc
atgtccctggaaggggtgatcggcaagcgcgcgggaagcccctatcgctcggcccgcagc
ccggactggatcaagctcaagtgccgccggcgccaggagttcgtgatcgtcggctacacc
gcacccaagggcagccgcagcggtttcggcgccttgctgctggccgtccatgacgagccg
ggtggtgacgagctgcgctatgccgggcgcgtcggcaccggcttcgacgaggcgcggctg
gccgacatccacggccgcctgcaggccatcgcccgggatgacagcccgctgaccagggcc
ctgccggcggcccagcgccgtggcgtgcactgggtggagccgcaactggtggccgaggtg
gagttcgccgagtggacgggcgatgccatcgtgcgccaggccgcgttcgtcgccttgcgc
agcgacaagccggcggagcagatcgtccgcgagcagccacgcagcgtggccaagccgaaa
aaggcgcccgagcccgccaccgagaagggcggcgagggagggcgccagacgctggccaag
gtctccatcagccacccgcagcgggtcatcgatgaccagagcggcacccagaagctggag
ctggcgcggtactacgcggatgtcgccgagtgggtgctgccgcacctgaaggggcgcccg
gtgtcgctgctgcgggcgccggagggcgtcggtggcgagctgttcttccagaagcacgcc
gagcgcctggcgatccccaatatccgccacctcgacccggagctggacccggggcacgcg
cggctgatggagatcgacacgctggaggccctggtgggcgcggtgcagatgggcgccatc
gagctgcacacctggggggccaccagcgaccgcatcgaacggccggaccgcctggtgctg
gacctggacccggacccgaagctgccctggaagaccatgcaggaggccacgcggctgacc
ctttccgtgctcgacgaactgggcctccaggcctggctgaagaccagtggcggcaagggc
atgcacctgatcgtcccgttggcgcggcatgccggctgggacgaggtgaagggattcggc
aaggccatcgcctccttcctcgcgcgccagttgccggagcgcttcgtcgacaagatgggg
ccgaagaaccgtgtcgggcgcatcttcgtcgactacctgcgcaaccagcgtggtgccagc
accgtctgcgcctattcggttcgggcgcggccgggcctgccggtgtcggtgcccatcgag
cgcgatgaactggaacgcctcaaggggtcggcgcaatggaccctggccacgctgcgccaa
cgcctcgacggcctcgagcgcgatccctggcacgactacctcgcccgtcaacgcatcacc
cgcgccatgtgggaccgcctggaagccgagcccgaagactga
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