Pandoraea thiooxydans: ABW99_01060
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Entry
ABW99_01060 CDS
T03947
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03030
DNA replication
ptx03430
Mismatch repair
ptx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABW99_01060
03430 Mismatch repair
ABW99_01060
03440 Homologous recombination
ABW99_01060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptx03032
]
ABW99_01060
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_01060
Enzymes [BR:
ptx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABW99_01060
DNA replication proteins [BR:
ptx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABW99_01060
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABW99_01060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AKJ67028
UniProt:
A0A0G3EJ29
LinkDB
All DBs
Position
1034413..1037877
Genome browser
AA seq
1154 aa
AA seq
DB search
MSEPRYLHLRLHSEYSIADGIARVDAAVEAAAADGQGALALTDLANLFGAIRFYKEARGR
GVKPIIGCDAWITNHAERDKPSRLLLLVKNRAGYLNLCQLLTRAWLTNQSRGKAEIDPAW
FEQGGMADGLLALSGAQLGDIGQAIAAGNADAARRHAEHWARVFPGAFYIELQRAGLPGT
EQYIQQAVMLASTLRLPVVATHPIQFMTPDDFTAHEARVCISEGEMLANPRRVKRFTAEQ
YFRTQDDMCALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQQAK
DGLEVRLAQLYPDPAEREAQRAAYEQRLTFETGTIIKMGFPGYFLIVADFINWAKNNGVP
VGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQDGRDRVIQY
VKEKYGADAVSQIATFGSMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKHVTLDDAM
KEEPLLAERFAAEDEVRQLMELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGEDG
GVVSQYDKDDVEAVGLVKFDFLGLTTLTILNWAERYIKRLHPEMADWSLAQVPLDDPQAF
GMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGRE
RTEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAKHR
ELFRDGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMA
ANMSLAMDDTDKVKILYEDCLANGLAVLPPDVNVSAYRFEPADAKTVRYGLGAIKGSGQS
AIEDILRARADKPFTDLFDFCARIDRRVVNRRTVEALIRAGAFDLLNPNRAQLMASVGLA
MEAAEQASASANQVSLFDLADGENLHAPIELVDEPAWPDKKKLQEEKTALGFYLSGHLFD
AYRDEVRRFVRIKLGDLSEGRDKLIAGVITSMRTQMTQRGKMLIALLDDGTGQIEVTVFN
EQYEAHRHCFKEDELLIVQGNARHDSFTGGLRFTTESVMDLGAARARYARALRLSFNGNA
DPLRLRAVLQPHCAIYRMGANGAGASGLPVHIRYARADAECESRLGDDWKVQPGDELLAE
LTSWLSPAAVELVY
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaccacgctatctccaccttcgcctccactccgaatactcgatcgccgacggt
atcgcgcgcgtcgacgccgccgtcgaggcggcggccgccgacgggcagggcgcgctcgcg
ctgaccgatctggccaatctgttcggggccattcgtttttacaaggaggcccgcggccgg
ggtgtcaagccgatcatcggctgcgatgcctggatcaccaaccacgccgagcgcgacaaa
ccgtcgcgcctgctgttgctggtgaaaaatcgcgccggctatctcaacctgtgccaattg
ctcaccagggcgtggctgaccaaccagtcgcgcggcaaagccgagatcgacccggcatgg
ttcgagcagggcggcatggccgacggtttgctggccttgtccggcgctcagttgggcgat
atcgggcaagccatcgcggccggcaacgccgatgccgcgaggcgccatgccgagcattgg
gcgcgcgtttttcccggtgcgttctatatcgaactgcagcgagccggcctgcccggcacc
gagcaatatatccagcaggcggtgatgctggcatcgacgctgcggttgccggtggttgcc
acgcacccgatccagttcatgacgccggacgacttcaccgcgcacgaggcgcgcgtgtgt
atctccgagggcgagatgctggcgaacccgcgccgcgtcaagcggtttaccgccgagcaa
tacttccgcacgcaggatgacatgtgcgcgttgttcgccgatattccgtcggcgctggcc
aacaccgtcgaaattgccaagcgctgcaatctgacgctcgaattgggcaagcccaagctg
ccgctgtttccgacacccgacggcatgtcgctcgacgactatctggtgcagcaggccaag
gatgggctggaagtacgtctcgcgcaactctatcccgacccggctgagcgcgaggcgcag
cgagctgcgtatgagcagcgactgacgttcgagaccggcacgatcatcaagatgggattc
ccgggctacttcctgatcgtcgccgacttcatcaactgggccaagaacaacggcgtgccg
gtcgggccggggcggggctccggggccggttcgctggtggcctacgcgctgggcattacc
gacctcgatccgctgcgctacaacctgctgttcgaacgcttcctgaatccggagcgggtc
tcgatgcccgacttcgatatcgacttctgccaggacgggcgcgaccgcgtcattcaatac
gtcaaggaaaagtacggcgccgatgcggtctcgcagatcgccacgttcggctcgatggcg
gccaaggccgcggtgcgcgacgtcggccgcgtgctcgacctcggctacaactttgtcgac
ggtgtggccaagctcattccgttcaagccgggcaagcacgtcacgctcgacgatgcgatg
aaggaggagccgctgctggccgagcgcttcgccgccgaagacgaagtacgccagttgatg
gaattggcgcagcgcgtcgagggcctcacccgcaacgtcggcatgcacgccgggggcgtg
ctgatcgccccgggcaagctgacggacttctgcccgctgtacacgcagggcgaggacggc
ggggttgtcagccaatacgacaaggacgacgtggaggccgtcggcctggtgaagttcgac
tttttgggcttgaccacgctgaccatcctgaactgggccgaacgctatatcaagcggctg
caccccgagatggccgactggtcgctcgcccaggtgccgctggatgatccgcaagcattc
ggcatgctcaaaaaggccaacacggtggccgtgttccagctggaaagccgaggcatgcag
ggcatgctcaaggacgcccagcccgatcgcttcgaggacatcatcgcgctggtagcgctg
tatcgtcccggcccgatggatctgattccgagcttctgtgcccgcaagcatggccgcgag
cgcaccgagtatcccgatccgcgcgtcgagccggtgctcaaggagacctacggcatcatg
gtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctgggcggc
gccgacttgctgcgccgcgcgatgggcaagaaaaaggccgaggaaatggccaagcatcgc
gaattgtttcgcgatggggccgccaagaatggcctctccgccgaaaaggccgacgaaatt
ttcgacttgatggaaaaattcgccggctacggtttcaacaagtcgcacgcggccgcctat
gcgttgctggcgtactacacagcctggctcaaggcgcaccatccggccgaattcatggcg
gccaatatgagcctggcgatggacgacaccgacaaggtcaagattctctacgaggattgc
ctggccaacggtctcgcggtgctgccgcccgacgtcaacgtgtcggcctaccggttcgag
ccggccgatgcgaaaaccgtgcgctacggcctgggcgccatcaagggcagcggccagagc
gcgatcgaagacattctgcgcgcgcgcgcggacaaaccctttaccgatctgttcgacttc
tgcgcacgtatcgaccgccgtgtggtcaaccggcgcaccgtcgaggcgttgattcgcgcc
ggggccttcgacctgctcaatccgaatcgcgcgcaattgatggcctcggtcggcctggcg
atggaagcggccgagcaggccagcgcctcggccaatcaggtcagcctgttcgatctggcc
gacggcgaaaacctgcatgcgccgatcgaactggtcgacgagccggcctggcccgacaag
aaaaagctgcaggaagagaagaccgcgctgggtttttatctctccggccatttgttcgat
gcctatcgcgacgaggtgcgccgctttgtacgcatcaagttgggcgatctgagcgagggc
cgcgacaagctgatcgccggcgtcatcaccagcatgcgcacgcagatgacgcaacggggc
aagatgctgatcgccctgctcgacgacggcacgggccagatcgaagtcaccgtgttcaac
gagcaatacgaggcgcatcgccattgtttcaaggaagacgaactgctgatcgtgcagggc
aacgcccggcacgacagcttcaccggcggtctgcgctttaccaccgaatcggtcatggat
ctcggcgcggcgcgggcgcgttatgcccgcgcactgcgcctgtctttcaatggcaatgcc
gacccgctgcgcctgcgcgcggtattgcagccgcattgcgcgatctaccgcatgggtgcc
aatggcgccggcgccagcggcttaccggtgcacattcgctatgcgcgggccgacgcggag
tgcgaatcgaggctgggcgacgactggaaggtccagcctggtgacgaactgcttgcggaa
ttgacttcgtggctgagtccggcggccgtggaactggtgtattga
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