Pandoraea thiooxydans: ABW99_04090
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Entry
ABW99_04090 CDS
T03947
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABW99_04090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_04090
Enzymes [BR:
ptx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABW99_04090
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABW99_04090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKJ67530
UniProt:
A0A0G3EKR0
LinkDB
All DBs
Position
complement(1694911..1698369)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPENDTPALPFALVKSGQRYAFAGSHGSADALLIARYFAAHRNAIPLLTVLCANTTDALR
LLQELRHCAPEARVRLLPDWETLPYDAFSPHQDLVSERLATLHDLSSRRCDIVLVPATTA
LYRMAPASFMAAYTFFFTQGDTLDEAGLKSQLTLAGYEHVSQVMRPGEYCVRGGLIDLYP
MGSPLPYRLDLFDNTIETIRAFDPDTQRSLYPVKEVRLLPGREFPFDEAARTAARARWRE
TFEGDPTRSPIYKDLGIGVPSAGIEYYLPLFFDETATLFHYLPEGAHLVMCGDLDAAIKR
FWSDTRQRFNFLSHDRERPILEPERLFLRDDDFFIFAKPFARLALPAAGDGTWAQALPPL
AVNRRADDPLAALRAYLARTPQRVLLCADSPGRRETLQQLLNEYDIRPTACESLEEFLHG
SDARVALTVAPFATGFEIPAEGLAVITENELFEGTVRRAGRRRQEQVSSVDSMVRDLAEL
KIGDPVVHSQHGIGRYLGLVGMDLGEGETEFLHLEYGGGAKLYVPVSQLHLISRYSGADP
DTAPLHALGSGQWEKAKRRAAEQIRDTAAELLNLYARRAARAGHAFEMSPRDYEKFADSF
GFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFIAIMGGKQVALLAP
TTLLAEQHAQTFADRFAEWPVRIAELSRFRSGKEISASIKAINEGQVDIVIGTHKLLSSE
VKFQRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIA
TAPQKRLAIKTFVRREDDSTIREAILRELKRGGQVYFLHNEVETIENRRAMLEALVPEAR
IAVAHGQMHERDLEQVMRDFVTQRTNVLLCTTIIETGIDVPTANTILMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGAGE
VLGDKQSGEMTEIGFQLYSDMLADAVKALKAGREPDLTAPLAATTEINLHVPAILPSDYC
ADVQERLSLYKRLANGTSRDAIDALQEELVDRFGKLPPQAQALIETHRLRLIAKPLGIAK
IDASEAAISLQFIPDPPIDALRIIELVQRDRHVKLAGQDKLRIEAAHTELGARVGKIKET
LRALAGAGAREQ
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaacgacaccccggcactgcccttcgcactggtcaaaagtgggcagcgctat
gccttcgccgggtcgcacggctccgccgacgcgctgctgatcgcgcgctattttgccgcc
catcgcaatgccatccccctgctgacggtgctgtgcgccaacaccaccgatgcgctgcgc
ctgctgcaggaactgcgacactgcgcgcccgaggcgcgcgtgcgcctgctgcccgactgg
gaaacgctgccctacgacgccttctcgccgcaccaggatctcgtctcggagcgcctggcc
accctgcacgacctgagcagccggcgctgcgacatcgtgctggtgcccgccaccaccgcg
ctgtaccggatggcgccggccagcttcatggcagcctacacgtttttcttcacgcagggc
gatacgctcgacgaggcgggcctgaagtcccagttgacgctggccggctacgagcacgtg
agccaagtgatgcgcccgggcgaatactgcgtgcgcggcgggttgatcgatctgtacccg
atgggctcgccgctaccgtaccggctcgacctgttcgacaacaccatcgaaaccattcgc
gcgttcgatccggacacccagcgcagcctctatccggtcaaggaagtgcggctgctgccc
gggcgggaatttccgttcgacgaagcggcccgcaccgccgcgcgggcgcgctggcgcgag
accttcgagggcgacccgacgcgcagcccgatctataaggatctgggcatcggcgtgccg
tcggcaggcatcgaatactacctgccgctgtttttcgacgaaacggccacgctgttccat
tacctgcccgagggcgcgcatctggtgatgtgcggcgacctcgacgccgccatcaagcgc
ttctggagcgacacccgccagcgcttcaattttctctcgcacgaccgcgagcgaccgatt
ctcgagcccgagcgcctgttcttgcgcgacgacgactttttcatattcgccaagccgttc
gcgcgactggcgctgccggcagccggcgacggcacctgggcccaggcgctgccgccgctg
gccgtcaatcgccgcgccgacgacccgctggcggccttgcgcgcctatttggcccgtacg
ccgcagcgcgtgctgctgtgcgccgactcgcccggtcggcgcgagacgctgcagcagttg
ctcaacgaatatgacatccggccgaccgcatgcgagtcgctggaggaattcctgcacggc
agcgacgcgcgcgtcgcgctgacggtcgcgccgttcgccaccggtttcgagattcccgcc
gagggcctggcggtcatcaccgagaacgaacttttcgaaggtaccgtgcggcgcgccgga
cggcgccgccaggaacaggtcagctcggtcgactcgatggtgcgcgacctggccgagttg
aagatcggcgacccggtggtgcacagccagcacggcatcggccgctacctcggcctggtc
ggcatggacctgggcgaaggcgagaccgagttcctccatctcgaatacggcggcggcgcc
aagctgtatgtgccggtctcgcaattgcacctgatctcgcgctactcgggcgccgatccg
gataccgcgccgctgcatgcgctcggctcgggccagtgggagaaggccaagcgccgcgcc
gccgagcagattcgcgacacggcggcggagctgctcaatctgtacgcacgccgcgccgcg
cgcgccggccatgcgttcgagatgtcgccgcgcgactacgaaaaatttgctgattcgttc
ggcttcgaggaaaccccggatcaagccgcggcgatcgctgccgttattgcagacatgaca
agcggcaagccaatggaccgcctggtgtgcggcgacgtagggttcggcaagaccgaagtg
gccttgcgggccgcctttatcgccatcatgggcggcaagcaggtcgcgctgctcgcgccc
accacgctgctggccgagcagcatgcgcaaacttttgccgaccgcttcgccgaatggccg
gtgcgcatcgccgaattgtcccgtttcaggagcggcaaggaaatctcggcgtcgatcaag
gccatcaacgaaggccaggtcgatatcgtcatcggcacgcacaagctcctgtcgagcgag
gtcaagttccagcgcctggggctggtgatcatcgacgaggagcaccgcttcggggtacgc
cagaaggaggcgctcaaggcgctgcgcgccgaggtcgacgtgctgaccctcaccgccacg
ccgattccgcgcacgctgggcatgtcgctcgaagggctgcgcgacttttcggtcatcgcc
acggcgccgcaaaagcgtctggcgatcaagaccttcgtgcggcgcgaggacgacagcacg
atccgcgaggccatcctgcgcgagctcaagcgcggcggccaggtctacttcctgcacaat
gaggtcgagaccatcgagaaccgtcgcgcgatgctcgaggcgctggtgcccgaggcgcgc
attgccgtggcacatggccagatgcacgaacgcgacctggagcaggtgatgcgcgatttc
gtgacgcagcgcaccaacgtgctgttgtgcaccaccataatcgagaccggtatcgacgtg
ccgaccgccaataccatcctgatgcatcgcgccgacaaattcggcctggcccagttgcat
cagttgcggggacgggtcgggcgctcgcaccatcaggcctatgcctatttgctggtgcac
gatccgcaggcactgaccaagcaggcgcagcgccggctcgaagccattcagcagatggag
gaactgggcgcaggcttttacctggccatgcacgacctggaaatccgcggcgcgggcgag
gtgctgggcgacaagcagtcaggcgagatgacggaaatcggctttcagctatacagcgac
atgctggccgatgcggtcaaggcgctcaaggccgggcgcgagcccgacctgaccgcgccg
ctggcggccaccaccgagatcaacctgcatgtgccggccattttgcccagcgactattgc
gccgacgtgcaggaacgcctgtcgctatacaagcgcctggccaacggcacctcgcgcgat
gccatcgacgcgctgcaggaggaactggtcgatcgtttcggcaagctgccgccgcaagcg
caggcgctgatcgagacgcatcgcttgcggctgatcgccaaaccgctgggcatcgccaaa
atcgatgcctcggaagccgctatttcgttacaattcattccagacccgccgatcgatgca
ctacgcatcatcgagttggtgcagcgcgaccgccacgtcaaactggccgggcaggacaag
ttgcgcatcgaggcagcccacacggagttgggcgcacgggtcggcaagatcaaggaaacg
ctgcgtgcgctcgcgggggcgggagcacgagaacaataa
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