Pseudomonas toyotomiensis: JWV26_18625
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Entry
JWV26_18625 CDS
T07285
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pty
Pseudomonas toyotomiensis
Pathway
pty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWV26_18625 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pty03400
]
JWV26_18625 (mfd)
Enzymes [BR:
pty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWV26_18625 (mfd)
DNA repair and recombination proteins [BR:
pty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JWV26_18625 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSL91762
LinkDB
All DBs
Position
complement(4023554..4026991)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLTIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPITTALHRLAPK
RFLLGGSLVLDVGQKLDVEQMRGRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEETDTLFDYLPGDTQVFSLPGIEKAAEHFWTDARS
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEPGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPREVEGWPAFVAS
PERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRTDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVDEAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMESNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCASELAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIDRADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIAGAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
SRLILYKRIANASDEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQADKLGISKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALLER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctaccggccagcgccggcaaacaacagtggggcaac
ctgcccggcgccgccctgtccctgactatcgccgaagccgccagcaatgccggccgcttc
acgctggtgctcaccgaaggcagccagagcgcggagcggctgcaggaagaactggcgttc
ttcgcccccgacctgccagtgctgcactttcccgactgggaaaccctgccctacgatgtc
ttctcgccgcaccaggacatcatctcgcaacgcatcgcagcactctatcgcctgccgcag
ctgagccgcggcatcctcgtagtgccgatcaccaccgccctacaccgcctggcacccaaa
cgcttcctgctgggtggcagcctggtgctggatgtgggccagaaactcgatgtggagcaa
atgcgcggccgcttggaggccgccggctaccgctgcgtcgatacggtgtacgagcacggc
gagttcgccgtgcgcggcgcattgatcgatctgttcccgatgggcagtgacacgccctac
cgtatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgaccccgagacccag
cgctcggtggacaaggtcgagtcgatccgcctgttgccggcacgtgaatttccgctggaa
aagaaagctgtcaccgatttccgcggacgtttccgcgagcgcttcgacgtggatttccgt
cgctgcccgatctatcaggacctttccaccggcatcacccccgccggcatcgagtactac
ctgccgctgttcttcgaagagacagacaccctgttcgactatctgccaggcgacacccag
gtgttctccctgcccggaatcgaaaaggctgccgagcatttctggacagatgcgcggagc
cgctatgaggaccgccgagtcgacccggagcgcccgctgctgccacctgccgacattttc
ctgccggtcgaggactgcttcgcccgtctgaagagctggccgcgcgtagtggtcaatcag
gacgatatcgagcccggcgtcggccagacccgctttgacgcacgcgccctgcccgacctg
gcgattcaggccaaggccggcgagccgctggcggcgttgcgccgctttatcgaagaatat
ccaggccgcgtgctgttctgcgccgaatcagccgggcgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctcaagccccgggaagtcgagggctggccggccttcgtggccagc
cctgaacgcctcaacatctgcatcgcaccactggatgaaggcctgctgctcgacgacctg
gcactgatcgccgagagcccgctgttcggccagcgcgtcatgcagcgtcgccgccgcgaa
aaaggccgagaaggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgca
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggccgccgaattcctcgccctgcagtatgccgacgaagccaagctttatgtc
cccgtggccagcctgcatctgatcgcccgctacaccggcagtgacgatgccctggcgccg
ctgcatcgccttggctcggaggtctggcagaaggccaagcgcaaggcggccgagcaggtg
cgcgatgttgccgccgagctgctcgacatctacgcccgccgggctgctcgtgaaggtttc
gccttccaggacccggcactggactacgccaccttcagcgccggtttccccttcgaggaa
accccggaccagcaggccgccatcgatgccgtgcgcaccgacatgctggccggcaagccg
atggatcgactggtctgcggtgacgtcggtttcggcaagaccgaggtggccatgcgcgcc
gctttcatcgccgtgcacagcggcaagcaggtcgccgtactggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcgacgaggccgtgcagcaactggccgaa
ggcaaggtggatatcgttatcggcacccacaagctgctgcaggacgacgtcaagttccac
aacctgggcctggtgatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaacag
ctcaaggccctgcgcagcgaggtcgacatcctcaccctgactgccacgccgatcccgcgc
acactgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacgccaccagcg
cggcgtctgtcggtgcgcaccttcgtcatggaaagcaacaagccgaccatcaaggaagcg
ctgctgcgcgagctgctacgcggtggccaggtctactacctgcacaacgatgtaaagacc
atcgagaaatgcgccagtgagctggccgagctggtgcccgaggcgcgtatcggcatcggt
cacggacagatgcgcgaacgtgatctcgagcaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggtatcgacgtgcctagcgccaac
accatcatcatcgaccgcgccgacaagttcggcctggcccagctgcaccagttgcgcggc
cgtgtcggtcgtagccaccaccaggcctacgcctacctgctgacgccaccgcgcaagcag
atgaccccggatgcggaaaaacgcctggaggccatcgcgggcgcccaggatctcggcgcc
ggcttcgtcctcgccacccacgacctggaaatccgcggtgccggcgaactgcttggcgac
ggccaaagcgggcagatccaggcggtcggcttcaccctctacatggaaatgctcgaacgc
gcggtcaaggccatccagaaaggcgaacagccgaacctcgaccaaccattgggtggcggt
ccggagatcaacctgcgtgtaccggcgctgatccccgaggactacctgcccgacgtgcac
agccgcctgatcctctacaaacgcatcgccaacgccagcgacgaggacggcctgaaggag
cttcaggtagaaatgatcgatcgtttcggcctgctgccggagccgaccaagaacctcatg
cgcctgaccctgctcaagctgcaggccgacaagctcggcatcagcaaggtcgacgccggc
ccgcagggcggacgaatcgagttcgccgcggaaacctgcgtcgacccgctgaccctgatc
aaactgatccaggcccagccaaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgagcggaagaacgcttcaacaccctggaagccctgctcgagcgc
ctcgcgcccaccacctga
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integrated database retrieval system
