Pseudomonas tensinigenes: HU718_011965
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Entry
HU718_011965 CDS
T07620
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU718_011965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptz03400
]
HU718_011965 (ligD)
Enzymes [BR:
ptz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU718_011965 (ligD)
DNA repair and recombination proteins [BR:
ptz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU718_011965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXI08380
LinkDB
All DBs
Position
2716489..2719080
Genome browser
AA seq
863 aa
AA seq
DB search
MSRNLDDYNRMRDFSSTSEPAAVKRSGRKAATDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGKLKFELQGEKLGGIWNLVRTHMPGKKENWFLIKHQDSAARPQDDYDVLVAEPD
SVLSERTLVTKPKLAAEQSKPPKKAPAKARKQATGKLTGAHKAKLPTQLKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDQVKLFTRNGHDWTHKLPQQAAALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFEAGRSGNILYYLFDLPYLNGVDLREVPVEERRAALATVLGSH
EQPLLRFSEAFDETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCQHRQEFVI
VGYTDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFNESTLKSILAQLKPLQVKKAAV
VNPPSGFDVKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKNITEERAKPVK
TTEKKTPTKKPAKKAPASNAETAPSQLGLANGKVRITHPDRVIDAVSGTTKMQLAEYYAS
VAEWILPQLKERPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMLINNAE
ALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGL
KAFLKTSGGKGIHVVVPLTRKLGWDEVKDFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPLFREEVAEIKGGNQWNVHNVHERLAEVGDEP
WADMKKTRQSITAEMRKRLGLKK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaaaccttgacgactacaaccgcatgcgcgacttctcgtcgacgtccgagccg
gccgccgtcaagcgctccgggcgtaaagccgccacggatcacgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgattttcgtctggaacttgatggcgccttg
aagagctgggcggtgccgaaagggccgtcgctcgaccccaaggtcaagcgtctggcggtg
catgttgaagatcatccgctggattacgcgacgttcgagggcagcatccccgaagggcat
tacggtgctggcgatgtgatcgtctgggatcgcggtgtgtggattccgctggaagatccg
cacaaggcctacgccaagggcaagctcaagtttgagctgcaaggcgaaaagctcggcggc
atctggaatctggtgcgcacgcacatgccgggcaagaaggagaactggtttctgatcaaa
catcaggacagcgccgctcgcccgcaagatgattacgatgtgttggtcgccgagccggac
agcgtgctgagcgagcgaacccttgtaaccaagcccaagttggccgcggagcaaagcaaa
ccgccgaaaaaggccccggccaaggcgcgcaagcaagcgaccggcaagctaaccggcgcg
cacaaggcgaaactgccgacgcagctcaagccggaactggccacgctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaaattcgatggctaccggatcatggcgcggatt
gatcatgatcaggtgaaactgttcactcgcaacggtcacgactggacgcacaagttgccg
caacaggccgcagccctggcggcgctgggattggaatcggcgtggctggacggggaaatg
gttgtcgccaacgaacagggcgtgccggattttcaggccctgcaaaatgcttttgaagcg
gggcgtagcggcaacattctctactacctgttcgatctgccgtatctgaacggcgtcgac
ttgcgcgaagtgccggtcgaggaacgtcgcgcggcgctggccacggtgctcggcagccat
gaacaaccgttgctgcgcttctccgaagccttcgacgaaaccccggatgcactgctcaac
agcgcctgccagatgcagatggaaggcctgatcggcaaacgtcttggctctccctatgtg
tcgcggcgcagcggcgactggatcaagctcaagtgccaacatcgccaggagtttgtgatc
gtcggttacaccgatccgaaaggttcgcgcagtgccttcggcgcattgctgttggggctg
cacgatcgcgacagtggcgaattacgctacgccggcaaggtcggcaccggtttcaacgag
tcgacgttgaaaagcattctggcccaactcaaaccgttgcaagtgaagaaggctgcggtg
gtcaatccacccagcgggttcgacgtcaaaggtgtgcattggctcaagccgaaactgctg
gcagaagtcgcatttgccgaaatgaccaaggacggttcggtgcgccacgccgtgttccat
ggattgcgcgacgacaagccagccaagaacatcactgaggagcgagcgaaaccggtgaag
accacagagaagaaaacgcctaccaaaaaaccagcgaaaaaggccccggcgagcaatgcc
gaaaccgcgccgtctcagctcgggctggctaacggcaaggtgcgcatcacgcacccggat
cgggtcatcgatgcagtcagcggtactaccaagatgcaactggccgagtactacgccagc
gtcgccgagtggattttgccgcaactcaaggagcggccggtggcgctggtacgcgcgccg
gacggcatcgccggtgagttattcttccagaaaaacgccgaacgcctggcgatccccggc
atcaccacactggacaaagacgtcaccgggcaaccggtgatgctgatcaacaacgccgaa
gcgttgattggcgcggtgcagatgagcaccgtcgaactgcacacctggaacgccactacg
gtcgatctggacaagcccgatcgctttgtcctcgaccttgacccggatccggcattgccg
tggaaaagcatggtcgaagcgacggcgctgacgttgactgtgctcgatgagttgggcctt
aaggcgtttctcaaaaccagtggcggcaagggcatccacgtggtggtgccgttgacccgc
aaactcggttgggatgaggtcaaggatttcagccacgccatcgtcagtcatatggccaag
ctgttgccggaccgcttttcggcggtgtccgggccgaaaaatcgcgttgggcggatcttc
attgattacctgcgcaacggtctgggcgccaccaccatttgcgcctatgcggcgcgcacc
cgcgaagggttgccggtgtcggtgccgctgtttcgtgaagaggtcgccgaaatcaagggc
ggcaatcagtggaatgtgcacaacgtgcatgagcggctggcggaggttggcgacgaaccg
tgggccgatatgaagaaaacccgccaaagcatcacggccgagatgcgcaaacggctcggt
ctgaaaaaatga
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