Pelosinus sp. UFO1: UFO1_0468
Help
Entry
UFO1_0468 CDS
T03211
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
puf
Pelosinus sp. UFO1
Pathway
puf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
puf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UFO1_0468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
puf03400
]
UFO1_0468
Enzymes [BR:
puf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UFO1_0468
DNA repair and recombination proteins [BR:
puf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UFO1_0468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_22
SNF2-rel_dom
RecG_dom3_C
UB2H
NBD94
Motif
Other DBs
NCBI-ProteinID:
AIF50029
UniProt:
A0A075K7A2
LinkDB
All DBs
Position
554111..557380
Genome browser
AA seq
1089 aa
AA seq
DB search
MNNLFEIMKNDPGIKRVLAAYQMTASQSQIYGVTGAQKSALLAAAYQLSPRPTVIITGNQ
ESVEQLRADFATLLPGTLVLELPALDIITFTAAAKGVELAARRMDVLGRMIRGENLIVLA
TAEATIQKVLPREHFENNRITITSGTEIIREELLESLVRFGYERVEQVDGLGQFSARGGI
IDIFPISNKVPIRLELFGDEVDSLREFDAGTQRSMHPVVQVDILPLSEVEQTGTPTVFLS
YLPPSATVVFDEAARVREQMSKLVKENPELKKSTFTWSDIVAVAKHYNVMYLSLMLQKIP
YTQPDEIVSITAKSIVPFQRQMDMLLAELKSWQEHKSYTIIFMSNSEKALSLQHSLVEDG
IHAVFSETIPTLVEGSVLVTVGLLTAGFELPQAHMAVITEKDIMGRQKKKPRPRVGKGQQ
IAYFRDIKIGDYVVHVNHGIGKYVGVETLVVGNVHKDYLHIRYAGEDKLYVPTDQVNLLQ
KYIGSEGDAPRLNKMGGSEWLKAKGKAEKAVADMAKELLEIYAKREIVSGYAFEADTPWQ
KEFEDAFPFEETPDQLSAITEIKADMQQAKPMDRLLCGDVGFGKTEVAVRAAFKAVMGGK
QVAILVPTTVLAQQHYQTISARFAGFGPVVDVISRFRSAKEQRATIEALRNGQVDVLIGT
HRILQSDVNFKDIGLLIVDEEQRFGVKQKEKLKQWSAGIDVLTLSATPIPRTLHMSLVGA
RDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMHRRLS
EMLPDAKIRVAHGQMPEEILEQAMLDFYEGNDDVLLCTSIIENGLDVPNANTIIVYDADR
FGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDL
EIRGAGNLLGAQQHGHIVSVGFEMYCRLLDEAVQQLKTGQKFEAPIEPVLEFNIDAYISG
DYISDAMHKIEIYQRIAASRNDQHISDLVDELVDRFGEPPTCVVNLLEVVRIKNLARAIG
IRSVIQQSNYIEVTFIDRPHVEPAQIMALKDAFPNRVMMYPEGIRLKTAQITNEALIGWL
VKVFKTLVP
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttatttgaaattatgaaaaatgacccagggataaagcgggtacttgccgct
tatcaaatgactgctagccaaagccaaatttatggcgtaacaggtgcgcaaaaaagcgca
ttactggctgcagcctatcaattaagtccaaggcctactgtgattattactggcaatcag
gagtcggtggagcaattgcgcgctgattttgccacattacttcctggtacccttgttctt
gaattgcctgctttggatattattacctttactgccgctgctaaaggggtagagttagca
gcccgccgtatggatgtgttaggacgcatgattcggggggaaaatctgattgttttagcg
acggctgaggcaacaatccaaaaagtgttaccacgagaacattttgagaataatcgtatt
acaataaccagcggcacagaaattatccgtgaggaattattagaatccttggttcgattt
ggttatgagcgagttgaacaagtagacggacttggtcaatttagtgccagaggcggaatt
atagatatatttcctattagcaataaagtgccaattcgtttggagttattcggcgacgaa
gtagattctctgcgtgaatttgatgctggaacacaacggtctatgcatcctgtggtgcaa
gttgatattttgcctctttctgaagtagagcaaacaggaacgcctaccgtgtttttatcg
tatttgcctcctagtgccaccgtagtatttgatgaggctgctcgcgttcgggagcagatg
agtaagttggttaaggaaaatcctgaactgaagaaaagtacgtttacttggtcagatata
gtagccgttgcgaaacattataatgtaatgtacctatctttaatgttacaaaagattcct
tacacccaacctgatgaaattgttagtattacggctaaaagtattgtgccatttcaacgt
cagatggatatgttactcgccgaactgaaaagttggcaggaacataaatcatataccatt
attttcatgtcaaatagtgagaaagccttatcacttcagcacagtttggtagaggacggc
attcatgccgttttttctgaaacaattcctaccctagtggaaggctctgtattagtgacc
gtaggcttattaacggcaggctttgagctgccacaggctcatatggccgtcattacagaa
aaagatattatgggcaggcaaaagaaaaagcctcgtccaagagtgggtaaagggcagcaa
attgcctacttccgtgatattaagattggcgactatgttgtacatgtcaatcatggtatt
ggaaagtatgtgggagtagagacccttgttgttggcaacgttcataaagactacttacac
atccgctatgctggagaagacaaactttacgttccgacagatcaagtaaatctattacaa
aagtacattggttcagaaggggatgcacctcgtttaaataaaatggggggcagcgaatgg
ctaaaagccaagggaaaagcagaaaaagccgtggcggacatggcaaaagaattgctagag
atctatgccaaacgggagatcgtatctggctacgcttttgaggcggatactccttggcaa
aaagaatttgaagatgctttcccttttgaagaaacgccagatcaattaagtgctattact
gaaataaaagcagatatgcagcaggcgaagcccatggatcgactattatgtggggatgtg
ggttttggtaaaacagaggttgctgttcgcgcagcctttaaagctgttatgggtggtaag
caagtggcgattttagtaccgactacagtgctggctcagcagcactatcagacgataagt
gctcggtttgccggttttgggccagtggtagatgtgattagtcgttttcgtagtgcaaaa
gagcaacgtgcaactattgaggccttaaggaacggccaagtagatgtattaattgggaca
caccgtatattgcaatcggatgtgaattttaaagatattggtctgctcattgtcgatgaa
gaacagcgttttggggtcaagcaaaaagaaaagttaaaacagtggagcgcaggcattgac
gtacttaccttaagcgctacaccaatcccacggactctacatatgtcattagtaggggcg
agggatatgagtattattgaaactcctcccgaagaacgtttccccgtacaaagttatgta
gtggaatataacgaagaagttatgcgtgatgcaattaaacgggaactaaaaagaggtggg
caggtatattttgtctataatagagtgcaaaccattgataaaatgcatcgtaggttgtca
gaaatgctgcctgatgccaaaattagggtagctcatgggcaaatgccagaagaaatatta
gaacaagctatgcttgatttttatgagggtaatgatgatgtattgctgtgcactagtatc
attgagaatggtcttgatgtaccaaatgccaataccattattgtttatgatgcagatcga
tttggtttatcacaactttatcagatgcgggggagagtcggacgttctcaccgtatggct
tttgcctattttacctatcgacaggataaagttttgacagaagtagctgaaaaacgtttg
caagcaattaaggagtttgcagaattaggtgcaggttttaaaattgctatgcgtgattta
gaaattaggggtgctggaaatctcttgggagcgcagcagcatggacatattgttagtgta
ggttttgaaatgtattgtcgtttattagatgaagcggttcaacagttaaaaactggacaa
aaattcgaggcaccgattgaaccagtgctagaatttaatatagatgcttatataagtggc
gactatattagtgatgccatgcataaaattgaaatataccaacgtattgctgccagtagg
aatgaccaacatatttcagatcttgttgatgaattggtagatcgatttggtgaaccaccc
acctgtgtggttaacttactagaagttgttagaattaaaaatttagcgagagctattggc
attcggtcagttattcagcaaagtaattatattgaagtcacatttatagatcggcctcat
gtagaaccggctcaaatcatggctctaaaagatgcgtttcccaatcgggtcatgatgtat
cctgaagggattcgtctaaagacggctcaaattacgaatgaggcattaattggctggttg
gtgaaagtatttaaaacattagttccttga
DBGET
integrated database retrieval system
