Paenibacillus urinalis: PUW25_05675
Help
Entry
PUW25_05675 CDS
T08959
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PUW25_05675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pui03400
]
PUW25_05675 (ligD)
Enzymes [BR:
pui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PUW25_05675 (ligD)
DNA repair and recombination proteins [BR:
pui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PUW25_05675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDI03458
LinkDB
All DBs
Position
complement(1283008..1283901)
Genome browser
AA seq
297 aa
AA seq
DB search
MPRSIKGTIQIEGQDITITNPDKPLWPEAGVTKAMYLQKLAELSPYLLKYCRNRLLTTIR
YPHGIHGEFFYQKNAPEPLPPYVKTAVHEGINYIVMEDLPVLLWLGNLAALEFHPSLHYA
GSKLPCEWMIDLDPSLPEEPRIMEAAHIVGQTLSSLGIQSVPKTSGATGVQIIVPIQSGI
TFEELRTLGHFVGMYVCQKHPDLFTLERLKKDRGNKIYFDYLQHYGGKTLAAPYTPRARE
HASVSTPLLWDEVAADVRPKDFHLLNIGARLAEKGDLLSALPPQPLENVLKHLKNKK
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgttcgatcaagggcacgattcaaattgaaggacaggatattacgattacgaat
ccagacaagccgctctggcctgaagccggcgttaccaaagccatgtatttgcagaagctg
gcagagctctccccctatctgctgaaatactgcaggaaccgcctgctcacgacgatccgg
tatccgcatgggattcatggagaatttttttatcaaaaaaatgcgcctgagcccctccct
ccctatgtcaagacagccgttcacgaagggatcaattatattgtgatggaggaccttcca
gtccttctatggcttggcaaccttgccgcgcttgagtttcatccttcgcttcattatgca
ggcagtaagctgccctgcgaatggatgattgatctcgaccccagcctgcccgaagaaccc
cgaataatggaagccgcgcacatcgtcgggcagaccctaagttcacttggcattcaatcc
gtacccaagacgtcgggcgctacaggtgtgcagattattgtgcccatccagagcgggatt
acgttcgaggagcttcggacgcttggtcattttgtcggcatgtacgtgtgccagaagcat
ccagacttattcacattggaacggctaaagaaggatcggggcaacaagatatattttgat
tatctccagcattatggtggtaaaaccttggccgccccctacactccacgcgccagggaa
cacgcctccgtttcaacgcctctcttatgggatgaggtagcagcagacgtacgtccgaag
gacttccatttgctcaatattggcgcccgcttggccgaaaaaggcgatctcctctccgct
ctgccgccgcagccactggagaatgtattgaagcacctgaagaataagaagtag
DBGET
integrated database retrieval system
